Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4161 ATGGAGAGTCCTCATTCTCCTTCTTCTTTCCCTTCCTCGCCTTCCTATTCATCCTCCTCAGAGGGCCAGAGCGCCGACGGCATCTTCGACGCCGACGAGCCCCGCACGCCCCTCGCAGTCCGCCGAGCCCTCCAGCTCCTCTACTCCGGCGACCCTGAACTCCAGGTCCAGGCAGCCCGCGACATCCGGAGGCTCACCAAGACCTCCCCCCGCTGCCGCCGACAGCTCTCCGAAGCTGTCGGTCCGCTCGTTTCCATGCTCCGAGTCGACTCGTCCGAGTCACACGAACCCGCGCTCCTCGCCTTGCTCAACCTCGCCGTCAAGGATGAAAAGAACAAAATCAATATTGTGGAGGCTGGTGCATTAGAACCCATAATCAGTTTCCTCAAGTCAGAAGATCTAAATCTGCAGGAGTCTGCAACTGCATCTTTGCTCACACTCTCTGCCTCTTCAACAAACAAACCGATCATCAGCGCTAGCGGAGCCATTCCTCTTCTCGTGGACATCCTGAGAGATGGAACCCCACAAGCCAAAGCTGATGCAGTTATGGCTCTCTCTAACTTATCAACGTACCCCAATAACCTCAGCATCATCCTCCAAACAAATCCAATCCCTTTCATAGTCAACATTCTCAAAACCTGCAAGAAATCATCAAAAACAGCTGAAAAATGCTGTTCCTTGATAGAATCCTTGATGGAGTACGACGAGGGAAGAATCGCCCTGACATTGGAAGAAGGCGGCGTGCTGGCAGTTGTGGAGGTTCTTGAGAGCGGGACACTCCAGAGCAGGGAGCACGCCGTTGGAGCGCTATTGACAATGTGCGAAAGCGACAGGTGTAAATACAGGGAACCAATCCTTAGAGAAGGCGTGATCCCGGGACTTCTGGAGCTAACTGTTCAGGGGACACCAAAGTCTCAGCCGAAGGCACGCACCCTTTTGCAGCTGCTAAGAGAGTCTCCTTACCCGAGATCTGAAATTCAGCCAGACACTCTTGAGAACATAGTGTGCAACATCATTTCACAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTGCAAGTTAGCATGGAACAGAGTTTAAGGCATTTACAGCAAAGGGCTCTTGTATGCACACCCACAAGTGATCTTCCTATTGCTTCAGAAGTTCCTTCAAAATCATAG 1182 0.5186 MESPHSPSSFPSSPSYSSSSEGQSADGIFDADEPRTPLAVRRALQLLYSGDPELQVQAARDIRRLTKTSPRCRRQLSEAVGPLVSMLRVDSSESHEPALLALLNLAVKDEKNKINIVEAGALEPIISFLKSEDLNLQESATASLLTLSASSTNKPIISASGAIPLLVDILRDGTPQAKADAVMALSNLSTYPNNLSIILQTNPIPFIVNILKTCKKSSKTAEKCCSLIESLMEYDEGRIALTLEEGGVLAVVEVLESGTLQSREHAVGALLTMCESDRCKYREPILREGVIPGLLELTVQGTPKSQPKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPTSDLPIASEVPSKS* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4161 393 Gene3D - 40 157 IPR011989 -
Amo13g4161 393 MobiDBLite consensus disorder prediction 1 25 - -
Amo13g4161 393 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 203 IPR000225 GO:0005515
Amo13g4161 393 Pfam Armadillo/beta-catenin-like repeat 110 147 IPR000225 GO:0005515
Amo13g4161 393 PANTHER U BOX DOMAIN-CONTAINING 29 377 - -
Amo13g4161 393 SMART arm_5 235 275 IPR000225 GO:0005515
Amo13g4161 393 SMART arm_5 68 107 IPR000225 GO:0005515
Amo13g4161 393 SMART arm_5 150 190 IPR000225 GO:0005515
Amo13g4161 393 SMART arm_5 109 149 IPR000225 GO:0005515
Amo13g4161 393 MobiDBLite consensus disorder prediction 1 32 - -
Amo13g4161 393 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 120 162 IPR000225 GO:0005515
Amo13g4161 393 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 29 377 - -
Amo13g4161 393 Gene3D - 158 320 IPR011989 -
Amo13g4161 393 SUPERFAMILY ARM repeat 42 342 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4161 Amo-Chr13 135178945 135182875 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4161 40 321 U-box Gene Family AT2G23140 34.155 5.90e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4161 - - gmx:100809684 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4161 13 135178945 135182875 Amo13g4161 13 135178945 135182875 ECH