Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4160 ATGGAGAGTCCTCATTCTCCTTCTTCTTTCCCTTCCTCGCCTTCCTATTCATCCTCCTCAGAGGGCCAGAGCGCCGACGGCATCTTCGACGCCGACGAGCCTCGCACGCCCCTCGCAGTCCGCCGGGCCCTCCAGCTCCTCTACTCCGGGGACCCTGAACTCCAGGTCCAGGCAGCTCGCGACATCCGGAGGCTCACCAAGACCTCCCCCCGCTGCCGCCGACAGCTCTCTGAAGCTGTCGGTCCGCTCGTTTCCATGCTCCGAGTCGACTCGTCCGAGTCACACGAACCCGCGCTCCTCGCCTTGCTCAACCTCGCCGTCAAGGATGAAAAGAACAAAATCAATATTGTAGAGTCTGGCGCATTAGAACCCATAATCAGTTTCCTCAAGTCAGAAGATCTAAATCTGCAGGAATCTGCAACTGCATCTTTGCTCACACTCTCTGCCTCTTCAACAAACAAACCGATCATCAGCGCTAGCGGAGCCATTCCTCTTCTCGTGGACATCCTGAGAGATGGAACCCCACAAGCCAAAGCTGATGCAGTTATGGCTCTCTCTAACTTATCAACGTACCCCAATAACCTCAGCATCATCCTCCAAACAAATCCAATCCCTTTCATAGTCAACATTCTCAAAACCTGCAAGAAATCATCAAAAACAGCTGAAAAATGCTGTTCCTTGATAGAATCCTTGATGGAGTACGACGAGGGAAGAATCGCCCTGACATTGGAAGAAGGCGGCGTGCTGGCAGTTGTGGAGGTTCTTGAGAGCGGGACACTCCAGAGCAGGGAGCACGCCGTTGGAGCGCTATTGACAATGTGCGAAAGCGACAGGTGTAAATACAGGGAACCAATCCTTAGAGAAGGCGTGATCCCGGGACTTCTGGAGCTAACTGTTCAGGGGACTCCAAAGTCTCAGTCGAAGGCACGCACCCTTTTGCAGCTGCTAAGAGAGTCTCCTTACCCGAGATCTGAAATTCAGCCAGACACTCTTGAGAACATAGTGTGCAACATCATTTCACAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTGCAAGTTAGCATGGAACAGAGTTTAAGGCATTTACAGCAAAGGGCTCTTGTATGCACACCCACAAGTGATCTTCCTATTGCTTCAGAAGTTCCTTCAAAATCATAG 1182 0.5144 MESPHSPSSFPSSPSYSSSSEGQSADGIFDADEPRTPLAVRRALQLLYSGDPELQVQAARDIRRLTKTSPRCRRQLSEAVGPLVSMLRVDSSESHEPALLALLNLAVKDEKNKINIVESGALEPIISFLKSEDLNLQESATASLLTLSASSTNKPIISASGAIPLLVDILRDGTPQAKADAVMALSNLSTYPNNLSIILQTNPIPFIVNILKTCKKSSKTAEKCCSLIESLMEYDEGRIALTLEEGGVLAVVEVLESGTLQSREHAVGALLTMCESDRCKYREPILREGVIPGLLELTVQGTPKSQSKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPTSDLPIASEVPSKS* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4160 393 Pfam Armadillo/beta-catenin-like repeat 110 147 IPR000225 GO:0005515
Amo13g4160 393 Gene3D - 40 157 IPR011989 -
Amo13g4160 393 MobiDBLite consensus disorder prediction 1 25 - -
Amo13g4160 393 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 203 IPR000225 GO:0005515
Amo13g4160 393 Gene3D - 158 319 IPR011989 -
Amo13g4160 393 MobiDBLite consensus disorder prediction 1 32 - -
Amo13g4160 393 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 29 377 - -
Amo13g4160 393 PANTHER U BOX DOMAIN-CONTAINING 29 377 - -
Amo13g4160 393 SMART arm_5 109 149 IPR000225 GO:0005515
Amo13g4160 393 SMART arm_5 150 190 IPR000225 GO:0005515
Amo13g4160 393 SMART arm_5 235 275 IPR000225 GO:0005515
Amo13g4160 393 SMART arm_5 68 107 IPR000225 GO:0005515
Amo13g4160 393 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 120 162 IPR000225 GO:0005515
Amo13g4160 393 SUPERFAMILY ARM repeat 42 345 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4160 Amo-Chr13 135132541 135136398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4160 40 317 U-box Gene Family AT2G23140 34.286 1.54e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4160 - - gmx:100809684 615.92