Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4158 CATTTCTTTGGATGTTCTTTTGAATTCTATCTTAACTTCAATTTTCTCCTCTTTCTATCTTATGCAAAAGAGAAGCAATTACATGGTGAGAGTTCATCATATGGTTGGCTCTACTCTCAACAAACTATACCTGCTCATAGCATCCAGGACCCTGCAGCTCAAGAACCAATATCCAAAAAGCGCATTTCAATGCAGGCTGAGAAAATGAAAGCTGCCAAGAAGCAATGCACAGATGAGAGTAAAATGCCAAAATCCAACAAGTCAGGAGCATCCAAGGATCCTCAAAGTGTTGCTGCTAAGAATAGAAGAGAGAGGATAAGTGAGCGGCTCAAGATACTACAAGAACTAGTTCCCAATGGCTCCAAAGTTGATTTGGTTACAATGCTGGAGAAAGCAATTAGCTATGTGAAGTTTCTTCAGCTTCAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTTCAAGGTGGAAAAGCTCCTGATATCTCTCAAGTAAAAGAAGCCATTGATGCCATTCTTTCATCCCAAAGATCAGAGGAACAAGTTCAGCAACCTCAAAGTAGATGA 567 0.4056 HFFGCSFEFYLNFNFLLFLSYAKEKQLHGESSSYGWLYSQQTIPAHSIQDPAAQEPISKKRISMQAEKMKAAKKQCTDESKMPKSNKSGASKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVQGGKAPDISQVKEAIDAILSSQRSEEQVQQPQSR* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4158 188 CDD bHLH_AtIND_like 91 153 - -
Amo13g4158 188 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 21 175 - -
Amo13g4158 188 Gene3D - 83 147 IPR036638 GO:0046983
Amo13g4158 188 MobiDBLite consensus disorder prediction 68 101 - -
Amo13g4158 188 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 90 139 IPR011598 GO:0046983
Amo13g4158 188 Pfam Helix-loop-helix DNA-binding domain 99 140 IPR011598 GO:0046983
Amo13g4158 188 SMART finulus 96 145 IPR011598 GO:0046983
Amo13g4158 188 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 88 149 IPR036638 GO:0046983
Amo13g4158 188 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 21 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4158 Amo-Chr13 135067771 135072741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4158 6 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 55.000 1.45e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo13g4158 HLH 5.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4158 - - aip:107615496 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4158 13 135067771 135072741 Amo13g4158 13 135067771 135072741 ECH