Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4144 ATGGCGACTCCAGAGGTTAATAAACCTCGTTCACTCCCTCCATACCCCGAGATGATTTTGAAGGCGATTGAAGCTCTTAATGAAGAGAACGGTTCGAACAAAACGACGATATCAAAGTACATAGAATCCACGTACGGAGGTTTGCCTCAGGGGTACAAGGCACTGCTCAATGTGCACCTTGCAAAGATGAGGGACAGTGGTGAGCTAGTGTTTTGGAAAAACAACTACACCATACGTAACCCCAACACGCCGCCACGGCGGGGCCGGGGCAGGCCCCCAAAGCCCAAGGACTCTCTCTCCCCGGGCATTATCATTGCACCCTCCAGGCCCCGGGGACGGCCCCCAAAGGACCTAAATGAGCTGCCACGCCCACTAAAGACTAAGACCTCGGGTGGGAGTGGCAGACCGAGAGGGCGGCCAAGGAAAATGGCCCGGCCCTCTGGGGGATTTGATGGCTCTCCACCTCCAATGGTGGTTGGGGGTACGCCTAGTGGCAGGGGGAGAGGGAGGCCTCCCAAAATGAAAGGTCCATTGGCGGAAATTAGTGTTGACCGATAG 558 0.5573 MATPEVNKPRSLPPYPEMILKAIEALNEENGSNKTTISKYIESTYGGLPQGYKALLNVHLAKMRDSGELVFWKNNYTIRNPNTPPRRGRGRPPKPKDSLSPGIIIAPSRPRGRPPKDLNELPRPLKTKTSGGSGRPRGRPRKMARPSGGFDGSPPPMVVGGTPSGRGRGRPPKMKGPLAEISVDR* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4144 185 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo13g4144 185 PRINTS High mobility group protein (HMGY) signature 84 96 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Amo13g4144 185 PRINTS High mobility group protein (HMGY) signature 99 110 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Amo13g4144 185 PRINTS High mobility group protein (HMGY) signature 110 121 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Amo13g4144 185 PRINTS High mobility group protein (HMGY) signature 123 142 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Amo13g4144 185 CDD H15 9 70 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo13g4144 185 Pfam linker histone H1 and H5 family 13 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo13g4144 185 Pfam AT hook motif 87 94 IPR017956 GO:0003677
Amo13g4144 185 Pfam AT hook motif 165 176 IPR017956 GO:0003677
Amo13g4144 185 Pfam AT hook motif 109 117 IPR017956 GO:0003677
Amo13g4144 185 Pfam AT hook motif 134 144 IPR017956 GO:0003677
Amo13g4144 185 PANTHER HISTONE H1 1 179 - -
Amo13g4144 185 Gene3D - 7 84 IPR036388 -
Amo13g4144 185 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
Amo13g4144 185 PRINTS AT-hook-like domain signature 106 117 IPR017956 GO:0003677
Amo13g4144 185 PRINTS AT-hook-like domain signature 132 142 IPR017956 GO:0003677
Amo13g4144 185 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo13g4144 185 SMART AT_hook_2 165 177 IPR017956 GO:0003677
Amo13g4144 185 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Amo13g4144 185 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Amo13g4144 185 SMART AT_hook_2 134 146 IPR017956 GO:0003677
Amo13g4144 185 PANTHER HMG-Y-RELATED PROTEIN A 1 179 IPR031059 GO:0003677|GO:0005634
Amo13g4144 185 SUPERFAMILY "Winged helix" DNA-binding domain 8 88 IPR036390 -
Amo13g4144 185 MobiDBLite consensus disorder prediction 76 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4144 Amo-Chr13 134848094 134849682 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4144 18 85 Single Myb Histone (SMH) Gene Family AT1G49950 42.647 7.54e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4144 - - gmx:100803968 223.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4144 13 134848094 134849682 Amo13g4144 13 134848094 134849682 ECH