Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4141 ATGTGTTCTCTTTGCTTTGGCCAGTCGATTCGCAGAGCCAGGCCTTTTCCATGGCAGCATGATTTATTTGAAGATAGTCTTCGAGCTGCTGGCATACAAGGAATTGAAGTTGGCACCAAGTTGTATGTGTCGAACTTGGACCATGGAGTAACCAATGAAGACATAAGGGAACTTTTTGCCGAGCTTGGAGAGTTGAAGCGCTATGCTGTTCATTATGACAAAAATGGTCATCAAAGTGGTTCTGCAGAAGTTGTTTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAACAATGTGCTTTTGGATGGAAAACCTATGAAGATCGAGATTGTTGGTGCCAATGCAGAGTTACCTGTAACGGCTCGTGTGAATGTCACTGGAGTTAATGGGCAGAGGAAACGGACTGTTGTGATGGCGCCAAGAGGAGGGCGAGGTGGAGGTCCTGCTGTCCCTAATCGTGGTGCTGGCATTGGTGCTGGTTGGGGACATCGTGGCGGCCCCCCAAGGAGTGGGAATGGACGAGGTCGAGGTCGGGGGCGTGGCAGGGCCGGCGTCCGAGGTCGTGGGAAAAAGGATGCAGTTGAGAAGTCAGCCGAGCAACTTGATAAAGAATTGGAGAACTATCATGCTGATGCCATGCAGTTCTGA 657 0.4916 MCSLCFGQSIRRARPFPWQHDLFEDSLRAAGIQGIEVGTKLYVSNLDHGVTNEDIRELFAELGELKRYAVHYDKNGHQSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANAELPVTARVNVTGVNGQRKRTVVMAPRGGRGGGPAVPNRGAGIGAGWGHRGGPPRSGNGRGRGRGRGRAGVRGRGKKDAVEKSAEQLDKELENYHADAMQF* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4141 218 Coils Coil 194 214 - -
Amo13g4141 218 Gene3D - 35 115 IPR012677 -
Amo13g4141 218 MobiDBLite consensus disorder prediction 189 212 - -
Amo13g4141 218 SUPERFAMILY RNA-binding domain, RBD 34 114 IPR035979 GO:0003676
Amo13g4141 218 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 116 IPR000504 GO:0003723
Amo13g4141 218 PANTHER THO COMPLEX SUBUNIT 4C 9 217 - -
Amo13g4141 218 SMART rrm1_1 40 112 IPR000504 GO:0003723
Amo13g4141 218 SMART FoP_duplication_2 143 217 IPR025715 -
Amo13g4141 218 CDD RRM_THOC4 39 113 - -
Amo13g4141 218 MobiDBLite consensus disorder prediction 141 218 - -
Amo13g4141 218 Pfam C-terminal duplication domain of Friend of PRMT1 149 213 IPR025715 -
Amo13g4141 218 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 109 IPR000504 GO:0003723
Amo13g4141 218 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 9 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4141 Amo-Chr13 134820864 134822813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4141 38 113 Eukaryotic Initiation Factors Gene Family AT2G23350 39.474 7.67e-11 59.3