LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g4122	ATGGATCTCTCCAAGAAGCGTAAAACGGAACAGAACGGGGACGCTGATTCCTCGCCTTCACAACAACCTCCCCCTTCCACCTCCCTCTCCGCAGACGACATCCGCAAGATCCTGCAACCCTTCACGCAGGAGCAGCTCATCGACCTCCTCCAGTCAGCGTCCCTCCGCCACCCCGATGTCCTCGACTCTGTCCGCTCCGTCGCCGACCGCGACTCCACACTCCGAAAGCTATTCGTCCGCGGCCTCGCCGCCGACACCACCACGGACACTATCCGCGCCATCTTCTCCGCCTACGGCGACCTAGACGAAGCCATCGTCATCTTCGACAAGAACACCGGAAAATCCAAGGGCTACGGCTTCGTCACTTTCTCCCACGTCGACGGCGCTGTCCTCGCCCTCAAGGATCCCAGCAAGAAAATCGACGGCCGCATGACCGTCACGCAGCTTGCCGCCTCCGGCGGACCCGGCGCCGCCTCAGCTACCGACGTAGCCGCACGGAAGGTGTTTGTAGGTAACGTCCCATTCGAAATCCCATCGGAGAGGCTCTTGAGCCACTTTCTTGCATACGGTGAGGTAGAAGAAGGTCCTTTAGGGTTTGATAAGAGTAGCGGTAAAACAAGAGGGTTTGCGTTCTTCGTGTACAAGACTGAAGAAGGTGCTAGGGCTTGTTTGGCAGAGCCAACGAAGACAATTGATGGCCACCAAGTGTTCTGCAAGTTGGCTGTGGATAACAAGAAAGCGAAGCCGCAGAATCCTGCTTCTGGTTTTGCAGGGGATGGTATGCATGCTCAGCAGCAACAGCAACAGCAACCTCAACCTTCTTACAATGCTCCTATGCTGATTTCTCAGTACGGTGGATATGCTGGCGGTGGTGGGCATGGCAACGGATATGGGATGCAGCCTTCGGTGCCGTCGTATGGGAACCCTGTTCCAGCTGCTGCTGCTGGTGTTGGTGGGTATGGGGCTACGGTTGGTGGGGGCGGTTATGGGAATTCGCAGTATGGCGGGCCGGTTTCCGGCGAGTATGGTGCGAGGTTGCCTCCTACGTCCGGTGGAGTACCCTCTGGTGGGTTTATGGATGGCTCCCATTATGGTGGTTTACCTTCGTCTGCAATTCCGTCACAACAGCCGCAGCCTGTTCCGATGCCAAGACCTGCCCCTCCTGGAGGAATGTACCAAGGCGTGCCGCCCTATTACTGA	1200	0.5742	MDLSKKRKTEQNGDADSSPSQQPPPSTSLSADDIRKILQPFTQEQLIDLLQSASLRHPDVLDSVRSVADRDSTLRKLFVRGLAADTTTDTIRAIFSAYGDLDEAIVIFDKNTGKSKGYGFVTFSHVDGAVLALKDPSKKIDGRMTVTQLAASGGPGAASATDVAARKVFVGNVPFEIPSERLLSHFLAYGEVEEGPLGFDKSSGKTRGFAFFVYKTEEGARACLAEPTKTIDGHQVFCKLAVDNKKAKPQNPASGFAGDGMHAQQQQQQQPQPSYNAPMLISQYGGYAGGGGHGNGYGMQPSVPSYGNPVPAAAAGVGGYGATVGGGGYGNSQYGGPVSGEYGARLPPTSGGVPSGGFMDGSHYGGLPSSAIPSQQPQPVPMPRPAPPGGMYQGVPPYY*	400

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo13g4122	399	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	166	254	IPR000504	GO:0003723
	Amo13g4122	399	MobiDBLite	consensus disorder prediction	1	30	-	-
	Amo13g4122	399	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	75	152	IPR000504	GO:0003723
	Amo13g4122	399	Gene3D	-	159	275	IPR012677	-
	Amo13g4122	399	MobiDBLite	consensus disorder prediction	346	399	-	-
	Amo13g4122	399	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	168	235	IPR000504	GO:0003723
	Amo13g4122	399	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	77	143	IPR000504	GO:0003723
	Amo13g4122	399	SUPERFAMILY	RNA-binding domain, RBD	65	155	IPR035979	GO:0003676
	Amo13g4122	399	MobiDBLite	consensus disorder prediction	14	30	-	-
	Amo13g4122	399	CDD	RRM_RBM24_RBM38_like	75	150	-	-
	Amo13g4122	399	MobiDBLite	consensus disorder prediction	260	279	-	-
	Amo13g4122	399	PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	1	363	-	-
	Amo13g4122	399	Gene3D	-	2	158	IPR012677	-
	Amo13g4122	399	MobiDBLite	consensus disorder prediction	248	279	-	-
	Amo13g4122	399	SMART	rrm1_1	167	239	IPR000504	GO:0003723
	Amo13g4122	399	SMART	rrm1_1	76	148	IPR000504	GO:0003723
	Amo13g4122	399	PANTHER	GEO13361P1-RELATED	1	363	-	-
	Amo13g4122	399	MobiDBLite	consensus disorder prediction	374	399	-	-
	Amo13g4122	399	SUPERFAMILY	RNA-binding domain, RBD	162	257	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g4122	Amo-Chr13	134390674	134393277	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo13g4122	162	307	C2H2 Transcription Factor Family	AT2G19380	29.545	9.48e-13	67.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g4122	K12741		-	gmx:100804230	446.047