Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4116 ATGGAAGGAGGAGCTGCCCCACCTGCTGACGCTGTCATGTCCGACGCGGCGCCTCCGCCGCAGGACCATCAACAGCAGCACCAGCAGCCGGCAGCGCCCACGGGTGTGGAGAATATTCCGGCGACGCTGAGCCACGGCGGTAGGTTCATCCAATACAACATATTTGGGAACATATTCGAAGTCACCGCCAAATACAAACCCCCCATTATGCCCATCGGGAAAGGCGCTTATGGCATCGTTTGTTCCGCTCTAAATTCGGAGACGAATGAGCATGTTGCCATTAAGAAGATTGCCAATGCATTTGACAACAAGATTGACGCCAAGAGGACCCTCCGTGAAATCAAGCTGCTTCGTCACATGGATCATGAAAATGTGGTTGCAATAAGGGATATAGTGCCACCACCTCAGAGGGAGGCATTCAATGATGTTTACATTGCCTATGAGTTGATGGACACTGATCTTCACCAAATCATTCGCTCAAATCAAGCATTGTCAGAGGAGCACTGTCAGTACTTTCTGTATCAAATCCTCCGTGGTTTGAAGTACATACATTCAGCAAATGTTTTGCATAGGGACTTGAAACCTAGCAACCTTCTCCTGAATGCCAACTGCGACTTAAAAATTTGTGATTTTGGACTGGCCCGTGTCACCTCTGAGACTGATTTCATGACTGAATATGTTGTTACAAGATGGTACCGAGCACCAGAGCTTCTGTTAAACTCTTCCGATTATACTGCAGCAATTGATGTATGGTCTGTTGGTTGTATCTTCATGGAACTGATGGATCGAAAACCATTGTTCCCTGGCAGAGATCACGTGCATCAACTGCGTCTACTTATGGAGCTCATTGGCACCCCATCAGAAGCTGATTTGGGATTTCTGAATGAAAATGCTAAGAGATACATTAGGCAACTCCCTCTTTACCGACGCCAATCTTTCCAAGAAAAGTTTCCTCAGGTCCATCCTGCTGCCATTGATCTTGTTGAAAAGATGTTGACCTTTGATCCTCGACAAAGGATTACTGTTGAAGATGCACTGGCACACCCGTACCTGACATCGCTGCATGACATAAGTGATGAACCGGTGTGCATGACCCCCTTCAACTTTGATTTTGAGCAGCATGCTTTGACAGAGGAGCAGATGAAAGAACTGATATACAGAGAGGCTCTAGCATTTAACCCTGAATATCAGTAA 1194 0.4665 MEGGAAPPADAVMSDAAPPPQDHQQQHQQPAAPTGVENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIVPPPQREAFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMELIGTPSEADLGFLNENAKRYIRQLPLYRRQSFQEKFPQVHPAAIDLVEKMLTFDPRQRITVEDALAHPYLTSLHDISDEPVCMTPFNFDFEQHALTEEQMKELIYREALAFNPEYQ* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4116 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Amo13g4116 397 SUPERFAMILY Protein kinase-like (PK-like) 71 359 IPR011009 -
Amo13g4116 397 SMART serkin_6 66 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4116 397 MobiDBLite consensus disorder prediction 1 40 - -
Amo13g4116 397 ProSitePatterns MAP kinase signature. 101 204 IPR003527 GO:0004707|GO:0005524|GO:0006468
Amo13g4116 397 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 28 396 - -
Amo13g4116 397 ProSitePatterns Protein kinases ATP-binding region signature. 72 96 IPR017441 GO:0005524
Amo13g4116 397 Gene3D Transferase(Phosphotransferase) domain 1 150 378 - -
Amo13g4116 397 Pfam Protein kinase domain 71 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4116 397 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 28 396 - -
Amo13g4116 397 ProSiteProfiles Protein kinase domain profile. 66 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4116 397 MobiDBLite consensus disorder prediction 19 35 - -
Amo13g4116 397 Gene3D Phosphorylase Kinase; domain 1 49 388 - -
Amo13g4116 397 CDD STKc_TEY_MAPK 59 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4116 Amo-Chr13 134348319 134352309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4116 1 397 MAP Kinase Gene Family AT2G43790 87.186 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Amo13g4116 Pkinase 6.5e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4116 K14512 - gmx:547616 748.429