Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4106 ATGGATCTCTCCAAGAAGCGTAAAACGGAACAGAACGGGGACGCTGATTCCTCGCCTTCACAACAACCTCCCCCTTCCACCTCCCTCTCCGCAGACGACATCCGCAAGATCCTGCAACCCTTCACGCAGGAGCAGCTCATCGACCTCCTCCAGTCAGCGTCCCTCCGCCACCCCGATGTCCTCGACTCTGTCCGCTCCGTCGCCGACCGCGACTCCACACTCCGAAAGCTATTCGTCCGCGGCCTCGCCGCCGACACCACCACGGACACTATCCGCGCCATCTTCTCRGCCTACGGCGACCTAGACGAAGCCATCGTCATCTTCGACAAGAACACCGGAAAATCCAAGGGCTACGGCTTCGTCACRTTCTCCCACGTCGACGGCGCTGTCCTCGCCCTCAAGGATCCCAGCAAGAAAATCGACGGCCGCATGACCGTCACGCAGCTTGCCGCCTCCGGCGGACCCGGKGCCGCCTCAGCTACCGACGTAGCCGCACGGAAGGTGTTTGTAGGTAACGTCCCATTCGAAATCCCATCGGAGAGGCTCTTGAGCCACTTTCTTGCATACGGTGAGGTAGAAGAAGGTCCTTTAGGGTTTGATAAGAGTAGCGGTAAAWCAAGAGGGTTTGCGTTCTTCGTGTACAAGACTGAAGAAGGTGCTAGGGCTTGTTTGGCAGAGCCAACGAAGACAATTGATGGCCACCAAGTGTTCTGCAAGTTGGCTGTGGATAACAAGAAAGCGAAGCCGCAGAATCCTGCTTCTGGTTTRSCAGGGGATGGTATGCATGCTCAGCAGCAACAGCAACAGCAACKMCAACCTTCTTACAATGCTCCTATGCTGATTTCTCAGTACGGTGGATATGCTGGCGGTGGTGGGCATGGCAACGGATATGGGATGCAGCCTTCGGTGCCGTCGTATGGGAACCKTGTTCCAGCTGCTGCTGCTGGTGTTGGTGGGTATGGGGCTACGGTTGGTGGGGGCGGTTATGGGAATTCGCAGTATGGCGGYCCGGTTTCCGGCGAGTATGGRGCGAGGTTGCCTCCTACGTCCGGTGGAGTACCCTCTGGTGGGTTTATGGATGGCTCCCATTATGGTGGTTTACCRTCGTCTGCAATTCCGTCACAYCAGCCGCAGCCTGTTCCGATGCCAAGACCTGCCCCTCCTGGAGGAATGTACCAAGGCGTGCCGCCCTATTACTGA 1200 0.5692 MDLSKKRKTEQNGDADSSPSQQPPPSTSLSADDIRKILQPFTQEQLIDLLQSASLRHPDVLDSVRSVADRDSTLRKLFVRGLAADTTTDTIRAIFSAYGDLDEAIVIFDKNTGKSKGYGFVTFSHVDGAVLALKDPSKKIDGRMTVTQLAASGGPGAASATDVAARKVFVGNVPFEIPSERLLSHFLAYGEVEEGPLGFDKSSGKXRGFAFFVYKTEEGARACLAEPTKTIDGHQVFCKLAVDNKKAKPQNPASGLXGDGMHAQQQQQQQXQPSYNAPMLISQYGGYAGGGGHGNGYGMQPSVPSYGNXVPAAAAGVGGYGATVGGGGYGNSQYGGPVSGEYGARLPPTSGGVPSGGFMDGSHYGGLPSSAIPSHQPQPVPMPRPAPPGGMYQGVPPYY* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4106 399 SUPERFAMILY RNA-binding domain, RBD 162 254 IPR035979 GO:0003676
Amo13g4106 399 SUPERFAMILY RNA-binding domain, RBD 65 155 IPR035979 GO:0003676
Amo13g4106 399 MobiDBLite consensus disorder prediction 14 32 - -
Amo13g4106 399 MobiDBLite consensus disorder prediction 340 399 - -
Amo13g4106 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 152 IPR000504 GO:0003723
Amo13g4106 399 Gene3D - 159 275 IPR012677 -
Amo13g4106 399 Gene3D - 2 158 IPR012677 -
Amo13g4106 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 254 IPR000504 GO:0003723
Amo13g4106 399 CDD RRM_RBM24_RBM38_like 75 150 - -
Amo13g4106 399 PANTHER GEO13361P1-RELATED 1 363 - -
Amo13g4106 399 SMART rrm1_1 167 239 IPR000504 GO:0003723
Amo13g4106 399 SMART rrm1_1 76 148 IPR000504 GO:0003723
Amo13g4106 399 MobiDBLite consensus disorder prediction 1 32 - -
Amo13g4106 399 MobiDBLite consensus disorder prediction 260 276 - -
Amo13g4106 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 235 IPR000504 GO:0003723
Amo13g4106 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 143 IPR000504 GO:0003723
Amo13g4106 399 MobiDBLite consensus disorder prediction 248 276 - -
Amo13g4106 399 MobiDBLite consensus disorder prediction 374 399 - -
Amo13g4106 399 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4106 Amo-Chr13 134212841 134216676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4106 162 254 C2H2 Transcription Factor Family AT2G19380 35.789 1.19e-12 67.8