Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4105 ATGGTTTACTCCTTTTATAACTCCAATGATTTTTCTTCCCCCGGCTACGATGTTTCGAGGTTGATTAGTCCTTCTTTGCATGACTATGGAGCTTCCTATGGTGMTTTGGAACCATCACATGCATTGATTTTGGAGAGTGAAAAGATAGAGCAAGTGAATAATGGATCAGAAGATGCAAGGGTAGGAAAGAATTATGAGAACTCTGATGCAAAAGCCTTAGCMGCTTTGAAGAATCACAGTGAAGCTGAGAGGAGGAGGAGGGAGAGAATCAATGGTCATCTTGCAACTCTACGAGGTCTTGTTTCCTCCACTGACAAGATGGACAAAGCAACAATATTATCAAAAGTGGTTAGCCAAGTGAAGGAATTGCAGAGGAATGCAATGGAAGCAAGTAAAGGTCTTCTAATCCCAACAGATTTTGATGAAGTTGAAGTTGAACCATATGAAGATCATAGATCCATGTCATACAAGGCATCCATCTGCTGTGATTACCGGCCGGAGATTCTCTTCGACCTGCGACACACACTTGATGCCCTTGAACTGCAACTGGTGAGGGCAGAGATATCAACCTTAGAAGGAAGAATGAAAAATGTGTTTGTGTATAGATGTTGCAAAGGGAAAGGTGACAATAATAACACCGAGGCATGTCAAGCTCTTGCAAGAAATGTTCAAAAGGCACTGAGTCTTGTAATAGATAAGGCTTCTAATGCACTTGAGTACTCACTCAGAGCTTCACTTCCATGTAAGAGAAGAAGAATCTGCTTGCTTGAGAATTGA 777 0.4144 MVYSFYNSNDFSSPGYDVSRLISPSLHDYGASYGXLEPSHALILESEKIEQVNNGSEDARVGKNYENSDAKALAALKNHSEAERRRRERINGHLATLRGLVSSTDKMDKATILSKVVSQVKELQRNAMEASKGLLIPTDFDEVEVEPYEDHRSMSYKASICCDYRPEILFDLRHTLDALELQLVRAEISTLEGRMKNVFVYRCCKGKGDNNNTEACQALARNVQKALSLVIDKASNALEYSLRASLPCKRRRICLLEN* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4105 258 PANTHER TRANSCRIPTION FACTOR BHLH30 35 257 IPR045847 GO:0003700|GO:0006355
Amo13g4105 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 126 IPR036638 GO:0046983
Amo13g4105 258 Pfam Helix-loop-helix DNA-binding domain 78 124 IPR011598 GO:0046983
Amo13g4105 258 Gene3D - 71 132 IPR036638 GO:0046983
Amo13g4105 258 PANTHER DNA BINDING PROTEIN-LIKE 35 257 - -
Amo13g4105 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 123 IPR011598 GO:0046983
Amo13g4105 258 SMART finulus 80 129 IPR011598 GO:0046983
Amo13g4105 258 CDD ACT_UUR-ACR-like 159 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4105 Amo-Chr13 134208354 134212172 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4105 51 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 34.555 4.05e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo13g4105 HLH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4105 - - gmx:100818879 293.508