Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4084 ATGAATGACCTATTCTCAAGTTCCTTCAAGAAATACACTGATGTGGCGCCGCAGAGCGACTACATGAACGATGTGGAGGCCGGAAAGGAAAGTATCAATCTGGACAAGTTCTTCGAAGATGTGGAGAATGTGAAGGAAGAYATGAGAACCATCGAGAAGCTGTACAGAAAGCTGCAAGAGGCGAATGAAGAGAGCAAGATTGTCCACAATGCTCAGACCATGAAGGATCTTCGCGCGAGAATGGACCAAGACGTSTCTCAGGTSCTGAAACGTGTGAAGATGATCAAGGGTAAGCTGGAGGCTCTAGAAAGGTCCAACGCAGAAAACAGAAAGCTTCCGGGGTGTGGTCCAGGGTCCTCAGCGGACAGGACAAGGTCTTCGGTTGTTAGTGGCTTGGGGAAGAAGTTAAAGGACTTGATGGATGACTTTCAAGGATTGAGGGCCAGGATGCAATCGGAGTACAAGGAGACAGTGGAGCGCAGGTATTTCACAATCACTGGGGAGAAGGCAGATGAAGACACCATTGAGAATTTGATCTCCAGCGGCGAGAGTGAGAGRTTCCTCCAGAAAGCAATTCAAGAACAGGGGAGGGGTCAGATTATGGACACCATTTCTGAAATTCAGGAGAGACATGATGCTGTGAAGGAGATAGAGAAGAACCTTCTTGAGCTTCACCAGGTGTTCCTCGACATGGCAGCTTTGGTGGAGTCTCAGGGCCAACAGCTCAACAACATAGAGAGCCATGTTGCTCATGCCAGTTCCTTCGTTCGCCGCGGCACCGAGCAGCTTCAGGAAGCTAGAGATATTCAAAAGGACTCCAGGAAGTGGTACTGCTATGCCGTCCTCCTCGTCATTGTCCTCATCATTGTCCTCCTCTTCCCTATATTGATAAACATAGCGCCTCACTTGTTTTGA 915 0.4863 MNDLFSSSFKKYTDVAPQSDYMNDVEAGKESINLDKFFEDVENVKEDMRTIEKLYRKLQEANEESKIVHNAQTMKDLRARMDQDVSQVLKRVKMIKGKLEALERSNAENRKLPGCGPGSSADRTRSSVVSGLGKKLKDLMDDFQGLRARMQSEYKETVERRYFTITGEKADEDTIENLISSGESERFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLQEARDIQKDSRKWYCYAVLLVIVLIIVLLFPILINIAPHLF* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4084 304 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Amo13g4084 304 Coils Coil 41 71 - -
Amo13g4084 304 CDD SynN 34 191 IPR006011 GO:0016020
Amo13g4084 304 SMART tSNARE_6 199 266 IPR000727 -
Amo13g4084 304 MobiDBLite consensus disorder prediction 107 127 - -
Amo13g4084 304 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020|GO:0016192
Amo13g4084 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Amo13g4084 304 SMART SynN_4 29 155 IPR006011 GO:0016020
Amo13g4084 304 CDD SNARE_syntaxin1-like 203 265 - -
Amo13g4084 304 Pfam Syntaxin 36 239 IPR006011 GO:0016020
Amo13g4084 304 PANTHER SYNTAXIN 14 296 IPR045242 -
Amo13g4084 304 PANTHER SYNTAXIN-124-RELATED 14 296 - -
Amo13g4084 304 Gene3D - 194 298 - -
Amo13g4084 304 Gene3D - 34 161 - -
Amo13g4084 304 Pfam SNARE domain 241 292 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4084 Amo-Chr13 133840102 133841837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4084 1 304 SNARE and Associated Proteins AT1G61290 76.645 2.78e-175 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4084 K08486 - gmx:100818999 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4084 13 133840102 133841837 Amo20g0483 20 6083931 6084851 PCT
Amo20g0483 20 6083931 6084851 Amo13g4084 13 133840102 133841837 PCT