Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4068 GAGGGTGTGGCGATGGCGGATGATGACGTGAACTTTTCGGAACTGTTCGATGGTGACGATGACGATAATATGTGCTATATCGATTTAACGACGGTGATGCAGGTTCTCAATGAGGATGACGACCCTCTGCAGCAGAGTAGTCCTGAAGATTTTTCATTACAAAATGGTTCATCTGGTGAATCTGGCGTCCATGATTCTTTTCAGCTTCAGAATGTTTGTCAAATGTTAGAAGAAGAACCACATGTTTCTAGGTTGGAGGTGGATTCAGCCACAGACTGCTCTCCTTTCTGCTCAGATGTGTCGGATTCTGGGGCCAAAGATTCAGTTCATTTTTCAGCGAATCCTGTGCTTGAGCGTGAACATGAAAATCAGGGACTTCCAAGTCAGGCTTGCTCTTCCACGGAAAAGACAGGGCTTTCTAAATTTGAGACATCTAGTTTTGGTATGGAAACTAGTTTCCCTGAGGCATATTCAAATAATGTATCAGTCTGTCAGGACTATTTGAATAAGAGTATGTGGAAGAGTGGAAATGAGAGGCAATTCAAGCATGTGGGAGAGGATGTTGAATCTGAACATGCTTCTCACAGTTCTATCATTGAGAATGGTGATTTAAATTTTGAAGATTGTGTTGAGGATGCTGTTCGAGGTGCTTATGGGCAACAAGAAAGTGACTTGTGCACATCTTTTCAAATATCTGATATGGAAGCTGATGATTCTTTGCATGCTTCAACTTCAATTGATTCTGCTCTTTATCAAGGTTCCCATTTTCCTAGCGATTTGTGTGGTGACTATGCATATCCAAATTATCATCAGGGAGGAACATATGATAGATCGTTTGCCAATGACCCAACTTTAAGGTTTATCCCTAATGGTATCGGTTCCAAGTCATGGACAAATAAAGAAATGATGACTAACCTGAAGGCTGAAAATATGGAGTTCTGTACAGATATGGCCCAAATCAGTGGTGGCATGCACTCAGTTAATACTGGGGGATCATCTATTCATGATAGTCAATTTACGCTAGCAGATAGTGGCTATTCATCATATTTTTCTGGTAACAGTGCTTTTGAAGATGGGGTGTCAGTTGCACTTTCAACTTATGCTTCACATGGAGATCAATCACTTTGTATGAAAGCTGAAGGGGACAAACTGGTTACAAGTTACCAAAATAATTTTCAGAACAATGATTCTCAGTTCAATATTGGCCAGGAGGTGAAACAGTTACCAGATCTTTTTCCTTCTGTGAAATGTAAGAGTTATGGATCTTTCCCATGTGAGGATAGTTATACAGTAATAACTTCTGATAGAGCCAATCATTATCAAGATACTATTAATGGAACTGCTAGTAAACTTCAAAGAAACATGGTCTATTTGACTGTAGACCAATGTTTGCCCCATGCCCATGCTTCCATTGCCGTTGAGCAGCAGTTTGGTTGTGTTAAGAGAGGAGGGACCGAAATGATTCAACATAACCGCATTGATTCTCATCATTCTAAACGAACTGCTGAGAATTTCCGTGTTGAGGACACTGATGTTTGTATCATTGAAGACAACAGTCATCCTGTGCCTACAAGTCAATCTGAAGCTGTTCGTAATTCCCTTAGTATATTTCAATCTTCCGGATATGTTGGTTCCCAACATTACGCGGTTGGAAGCACAAGGGTAAAGGCATGTGATGAGCGAAATATATTACAAGTTGCATTGCAGGATCTATCTCAACCAAAGTCAGAAATTAGTCTGCCAGTTGGATTGTTGGCGGTTCCTCTTTTGAGACATCAGAGAATTGCTTTATCGTGGATGGTTCAGAAGGAAACATCAAGCTTATATTGCTCAGGTGGAATACTTGCAGATGATCAGGGACTTGGGAAAACGGTGTCAACTATTGCTTTAATATTGAAGGAAAGGCCTCCAAAATTATCTGCATGCCCCAATGCCCAAAATGGTGAATTGGAAACTTTGAATCTGGATGGAGAGGATGATGGTCTTCCTCAGAGCAGTTTGTTAAAGAAGGAATCTGATTCATGCGGAGACATGTCAATTAGAGATCCAATCAAGAGCAAGAGTTTATCTTTGCAAACAAAGGGAAGGCCATCTGCAGGAACCCTTATTGTCTGCCCCACTAGCGTCCTGCGTCAATGGGCTGAGGAGTTGCACAATAAGGTAACTAGCCAAGCAAATCTCTCTGTGCTAGTATACCATGGAAGCAATCGAACGAAAGACCCTCATGAGGTGGCCAAGTATGATGTTGTTCTAACAACTTATTCCATTGTCAGCATGGAGGTCCCTAAGCAGCCGCTAGCTGACAAAGAAGATGAAGAGAAGGGAATATTTGAAGATTCTGGGGTACCAAATAGGAAGAGGAAAAACCCTTCTAATTCTAGTAAAAGTGGCAAGAAGCGATTGGACAACGCATTGCTTGAGGCTGCTGCTCGACCTCTTGCAAAGGTATCATGGTTTAGGGTTGTCCTGGATGAGGCTCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCTTGTTCGGGTCTTCGTGCTAAGCGCAGATGGTGTTTGTCAGGGACCCCAATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTCTGAGATATGCCCCTTATGACATTTATACATCATTCTGTTCTATGATTAAGAATCAGGTTAGCAGAAATCCTACAAAAGGGTATAAAAAGATACAAGCCGTCCTAAAGACAATAATGCTACGTCGGACCAAAGGAACATTTCTTGATGGGGAGCCTATTATATCCTTGCCACCTAAATTTGTAGAGCTTAAAAAAGTTGAGTTTTCAATGGAGGAGCGTGATTTCTATTCCAAACTGGAGGCTGATTCTCGTGCGCAGTTTCAGGAATATGCTGATGCTGGAACTGTAAAACAAAATTATGTCAACATTTTGCTTATGCTTTTGCGCCTTAGACAAGCTTGTGATCACCCTTTGCTTGTTAAGCGTTACAATTCCAACACTCTATGGAGATCTTCTGTCGAGATGGCAAAAAAGCTTCCCCAGGAAAAACAAGTATCCCTTCTTAAGTGTTTGGAGGCTTCCCTGGCTCTCTGTGGAATCTGTAATGATCCTCCTGAAGACGCCGTTGTTTCAGTCTGCGGTCATGTCTTCTGTAGCCAGTGCATTTCGGAACATCTTACCGGTGATGACAATCAGTGTCCTGCTGCAAATTGCAAAAGTCGACTCAGCATGTCTACTGTTTTTGCGAAAGCGATGCTCAACGGTTGTATGTCTAACCAGGGTTGTGATAGTTCACCTGGTTCGTCTGGTTCTGAAGTGGATGAATCTGAGCCTTGGTCTCGGAGTCAGCCTTATGATTCTTCTAAAATTAAGGCTGCACTTGAGGTTTTAAAGTCATTGAGTAGGGTACAGTGCATTACACCCAAAGTTATATCTGCACATGGTACTCCTGCAGAAAATACTGAATGCCCTGGGGTATCCTGTGATGTTAACAATGGGAAACGCTTGGAAGATATTCCTGAAAGTCAACATCTCTCTGGGAATAGCAGTTCTAATGGCACAGGAGAGAAAGCAATAGTATTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGTGTGTCTTAAGCAATCTTCGATTCAGTATAGAAGACTTGATGGAACGATGTCTGTCATTGCAAGAGATAAAGCTGTTAAAGATTTTAATACTCTACCAGAGGTTTGTAAAGTCGCTGATTGTTTGGTATTGTTATTGAACTTCTAG 3750 0.416 EGVAMADDDVNFSELFDGDDDDNMCYIDLTTVMQVLNEDDDPLQQSSPEDFSLQNGSSGESGVHDSFQLQNVCQMLEEEPHVSRLEVDSATDCSPFCSDVSDSGAKDSVHFSANPVLEREHENQGLPSQACSSTEKTGLSKFETSSFGMETSFPEAYSNNVSVCQDYLNKSMWKSGNERQFKHVGEDVESEHASHSSIIENGDLNFEDCVEDAVRGAYGQQESDLCTSFQISDMEADDSLHASTSIDSALYQGSHFPSDLCGDYAYPNYHQGGTYDRSFANDPTLRFIPNGIGSKSWTNKEMMTNLKAENMEFCTDMAQISGGMHSVNTGGSSIHDSQFTLADSGYSSYFSGNSAFEDGVSVALSTYASHGDQSLCMKAEGDKLVTSYQNNFQNNDSQFNIGQEVKQLPDLFPSVKCKSYGSFPCEDSYTVITSDRANHYQDTINGTASKLQRNMVYLTVDQCLPHAHASIAVEQQFGCVKRGGTEMIQHNRIDSHHSKRTAENFRVEDTDVCIIEDNSHPVPTSQSEAVRNSLSIFQSSGYVGSQHYAVGSTRVKACDERNILQVALQDLSQPKSEISLPVGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPKLSACPNAQNGELETLNLDGEDDGLPQSSLLKKESDSCGDMSIRDPIKSKSLSLQTKGRPSAGTLIVCPTSVLRQWAEELHNKVTSQANLSVLVYHGSNRTKDPHEVAKYDVVLTTYSIVSMEVPKQPLADKEDEEKGIFEDSGVPNRKRKNPSNSSKSGKKRLDNALLEAAARPLAKVSWFRVVLDEAQSIKNHRTQVARACSGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYAPYDIYTSFCSMIKNQVSRNPTKGYKKIQAVLKTIMLRRTKGTFLDGEPIISLPPKFVELKKVEFSMEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNTLWRSSVEMAKKLPQEKQVSLLKCLEASLALCGICNDPPEDAVVSVCGHVFCSQCISEHLTGDDNQCPAANCKSRLSMSTVFAKAMLNGCMSNQGCDSSPGSSGSEVDESEPWSRSQPYDSSKIKAALEVLKSLSRVQCITPKVISAHGTPAENTECPGVSCDVNNGKRLEDIPESQHLSGNSSSNGTGEKAIVFSQWTRMLDLLEVCLKQSSIQYRRLDGTMSVIARDKAVKDFNTLPEVCKVADCLVLLLNF* 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4068 1249 ProSiteProfiles Zinc finger RING-type profile. 1027 1066 IPR001841 -
Amo13g4068 1249 Pfam Zinc finger, C3HC4 type (RING finger) 1027 1063 IPR018957 GO:0046872
Amo13g4068 1249 SMART ring_2 1027 1065 IPR001841 -
Amo13g4068 1249 ProSitePatterns Zinc finger RING-type signature. 1042 1051 IPR017907 -
Amo13g4068 1249 SUPERFAMILY RING/U-box 1024 1077 - -
Amo13g4068 1249 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 515 1237 - -
Amo13g4068 1249 Gene3D - 926 1248 IPR027417 -
Amo13g4068 1249 SMART ultradead3 585 901 IPR014001 -
Amo13g4068 1249 MobiDBLite consensus disorder prediction 656 676 - -
Amo13g4068 1249 MobiDBLite consensus disorder prediction 40 62 - -
Amo13g4068 1249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1020 1078 IPR013083 -
Amo13g4068 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 579 911 IPR027417 -
Amo13g4068 1249 MobiDBLite consensus disorder prediction 765 800 - -
Amo13g4068 1249 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Amo13g4068 1249 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 515 1237 - -
Amo13g4068 1249 MobiDBLite consensus disorder prediction 765 785 - -
Amo13g4068 1249 CDD SF2_C_SNF 1184 1247 - -
Amo13g4068 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 919 1239 IPR027417 -
Amo13g4068 1249 CDD DEXDc_SHPRH-like 589 911 - -
Amo13g4068 1249 Gene3D - 559 648 IPR038718 -
Amo13g4068 1249 Pfam SNF2-related domain 609 988 IPR000330 GO:0005524|GO:0140658
Amo13g4068 1249 Gene3D - 800 912 IPR038718 -
Amo13g4068 1249 Gene3D - 684 774 IPR038718 -
Amo13g4068 1249 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 604 873 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4068 Amo-Chr13 133613829 133621926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4068 480 1249 RAD5 or RAD16-like Gene Family AT1G61140 55.637 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo13g4068 SNF2_N 6e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4068 - - gmx:100802436 1556.96