Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4066 ATGGATAATGTTGTTACATTATTGTTAAAGTTAAAGCTGAGAAGCTTGTATAGTATAATGTTGTTACTTTATTATGTGTTGTGCTTAAGGGGTGTTATTGTGTCCTCTAGACCTCATGAGAATGAGAGAAAAGTAACAACGATTATGAATAACAATAATAATAATAATGGTGATGTTGTGAGAGGCTTACCTGGCCAGCCTGCTGTGGATTTTGAGCACTATGCTGGCTATGTTACTGTGAATGAAACCAATGGAAGAGCACTCTTTTACTGGTTCTTTGAGGCCATTACCAACCCAGATGATAAGCCTTTGGTCCTATGGCTTAATGGAGGACCTGGATGTTCTTCTGTGGGATATGGAGCAACACAAGAGATTGGTCCATTTTTAGTGGACTCTGATGGGCAGGGACTCGAATTTAATAACTTGTCTTGGAACCAAGAAGCCAACATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCCTACTCAAACACAACTAGTGATTATGAACAATTGGGTGATCAAATGACAGCTAATGATGCTTACACTTTTCTCCACAACTGGTTCCTCAAGTTCCCATCCTATAGAACAAGGACTTTTTACATAGCAGGGGAGAGTTATGCAGGCAAGTATGTGCCGGAGCTGGCTGAACTCATCCATGATAGGAACAAGGACCCCTCCCTTCATATTAATCTCAAGGGCATTATGTTAGGAAATCCAGAAACATCTGATGCTGAGGATTGGATAGGGCTAGTAGACTATGCTTGGAGTCATGCAATCATATCAGACGAGACTCACAAAACAATAAAAACAAGTTGTGACTTCAACAGCAGCGATCCATGGCGTAACCAAGATTGCAGTGAAGCAGTAGATGAAGTCCTCAAACAATACAGAGAAATTGATATATACAGCCTCTACACCTCTACTTGCTTTGCCTCTACAGCGCGCTCTTCCATGGCGCGCTCATCATCATCTACAACAATGATGCCTAGAATGATGGGTGGTTATGACCCATGCTTGGATGACTATGCTAGAGCTTATTATAATAGACCCGATGTTCAGAAGGCCCTACATGCTGGTGATGGCCACAATCTCAAGAATTGGAGTATTTGCAACAATGATATATTCAATGGATGGGGAGATTCAAAGGCAAGTGTAGTGCCAATATACAGGAAGCTAATATCAGGAGGAGGACTTAGGATATGGATTTACAGTGGAGACACAGATGGAAGAGTGCCAGTGCTGTCAACAAGGTATAGCTTAAGTTCTCTTGAATTGAGAGTGAGAAAGGCATGGAGACCATGGTACCATGAGAATGAGGTGAGTGGGTGGGTAGAAGAATACGAAGGGCTAACATTTGCTACTTTCAGAGGAGCTGGCCACGCTGTTCCATGTTTCAAACCAAGTAGCTCTCTCGCCTTCTTCTCTTCCTTCCTTCGTGGACAATCCCCTCCTTCTACTAAATAA 1470 0.4231 MDNVVTLLLKLKLRSLYSIMLLLYYVLCLRGVIVSSRPHENERKVTTIMNNNNNNNGDVVRGLPGQPAVDFEHYAGYVTVNETNGRALFYWFFEAITNPDDKPLVLWLNGGPGCSSVGYGATQEIGPFLVDSDGQGLEFNNLSWNQEANMLFLESPVGVGFSYSNTTSDYEQLGDQMTANDAYTFLHNWFLKFPSYRTRTFYIAGESYAGKYVPELAELIHDRNKDPSLHINLKGIMLGNPETSDAEDWIGLVDYAWSHAIISDETHKTIKTSCDFNSSDPWRNQDCSEAVDEVLKQYREIDIYSLYTSTCFASTARSSMARSSSSTTMMPRMMGGYDPCLDDYARAYYNRPDVQKALHAGDGHNLKNWSICNNDIFNGWGDSKASVVPIYRKLISGGGLRIWIYSGDTDGRVPVLSTRYSLSSLELRVRKAWRPWYHENEVSGWVEEYEGLTFATFRGAGHAVPCFKPSSSLAFFSSFLRGQSPPSTK* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4066 489 Gene3D - 340 378 - -
Amo13g4066 489 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 18 485 IPR001563 GO:0004185|GO:0006508
Amo13g4066 489 ProSitePatterns Serine carboxypeptidases, serine active site. 203 210 IPR018202 GO:0004185
Amo13g4066 489 Gene3D alpha/beta hydrolase 55 313 IPR029058 -
Amo13g4066 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 153 163 IPR001563 GO:0004185|GO:0006508
Amo13g4066 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 452 465 IPR001563 GO:0004185|GO:0006508
Amo13g4066 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 189 214 IPR001563 GO:0004185|GO:0006508
Amo13g4066 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 140 152 IPR001563 GO:0004185|GO:0006508
Amo13g4066 489 PANTHER CARBOXYPEPTIDASE 18 485 - -
Amo13g4066 489 SUPERFAMILY alpha/beta-Hydrolases 56 484 IPR029058 -
Amo13g4066 489 Gene3D - 387 482 - -
Amo13g4066 489 Pfam Serine carboxypeptidase 65 482 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4066 Amo-Chr13 133600413 133603004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4066 345 483 Calmodulin-binding Proteins AT2G22960 34.286 2.01e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4066 K16297 - gmx:100793427 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4066 13 133600413 133603004 Amo10g0172 10 1835485 1839443 PCT
Amo10g0172 10 1835485 1839443 Amo13g4066 13 133600413 133603004 PCT