Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4065 ATGATCATGGTGGATAATAGCACAGATTCATCATCAGGAGCGGGTGATCAGCATCATCACCCTCAGCTTCCTCCAGGCTTTCGATTCCACCCCACAGACGAAGAACTCGTCGTTCACTACCTTAAAAAGAAAGCTTCTTCTTCACCACTCCCTGTCGCCATCATCGCCGACGTTGATCTCTATAAGTTCGATCCATGGGAGCTCCCAAGTAAGGCAGCGTTTGGGGATCAAGAGTGGTACTTTTTCAGTCCTCGGGATAGGAAGTACCCGAATGGAGCTCGGCCAAACAGGGCGGCTACTTCTGGGTATTGGAAAGCCACCGGGACGGATAAGCCTATTCTCTCTTCTGATGGGAACAAGCAGAAAGTTGGAGTCAAGAAAGCGCTTGTTTTTTATGGTGGCAAGCCCCCCAAAGGTGTCAAAACCAATTGGATTATGCATGAGTATAGGCTCACCGATAACAATAACAATGCTTCTTCTTCTATTTCATCTAAGCCTCCTTCTATCCCTCTTGATCCACTCAAGAAGACTTCTCTCAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAGAGCAACAGCAGTAGTAGCAGCCTTCCAATTCCAAGGCCAGCGTTTTTAATGGATGAAGAGAAGGATCTAATTTCCATGGAGAACAGCATGGTGCCAACTATGTCAATGTCAAAACCAAGAAGCACTTCAACAACAGGTTGTTATGGACCCATGGCACTTGAAAACGATGACAACTTCTTCGATGGTATATTGGCAGCATCAACCGATCATCACACCATGCAAAATGGGTCTCCAGGGTCCTCATCTTCAAGCAAGAGATTCCATGGTGATCTTAATAATGGAGACAACACCTCCTTCGTTTCTCTTCTTAACCAGCTTCCTCACAACACACCGTTTCACCCAAACTCCATTCTTGGCTCCGTGGGAGACGCTGTCTTGAGGCAACAATTTCAACTTCCAGGCTTAAATTGGAACTAA 993 0.4612 MIMVDNSTDSSSGAGDQHHHPQLPPGFRFHPTDEELVVHYLKKKASSSPLPVAIIADVDLYKFDPWELPSKAAFGDQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILSSDGNKQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLTDNNNNASSSISSKPPSIPLDPLKKTSLRLDDWVLCRIYKKSNSSSSSLPIPRPAFLMDEEKDLISMENSMVPTMSMSKPRSTSTTGCYGPMALENDDNFFDGILAASTDHHTMQNGSPGSSSSSKRFHGDLNNGDNTSFVSLLNQLPHNTPFHPNSILGSVGDAVLRQQFQLPGLNWN* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4065 330 MobiDBLite consensus disorder prediction 261 282 - -
Amo13g4065 330 PANTHER NAC TRANSCRIPTION FACTOR 56 6 276 - -
Amo13g4065 330 Pfam No apical meristem (NAM) protein 24 151 IPR003441 GO:0003677|GO:0006355
Amo13g4065 330 SUPERFAMILY NAC domain 19 192 IPR036093 GO:0003677|GO:0006355
Amo13g4065 330 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 6 276 - -
Amo13g4065 330 MobiDBLite consensus disorder prediction 1 17 - -
Amo13g4065 330 ProSiteProfiles NAC domain profile. 23 192 IPR003441 GO:0003677|GO:0006355
Amo13g4065 330 MobiDBLite consensus disorder prediction 1 28 - -
Amo13g4065 330 Gene3D NAC domain 32 197 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4065 Amo-Chr13 133593440 133595004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4065 4 330 NAC Transcription Factor Family AT1G61110 56.977 2.39e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo13g4065 NAM 2.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4065 - - gmx:100792372 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4065 13 133593440 133595004 Amo10g0175 10 1854606 1856545 PCT
Amo10g0175 10 1854606 1856545 Amo13g4065 13 133593440 133595004 PCT