Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4056 ATGGGTTTGAGTTCCAAGCAGGTTTCAAGGAGTAGTAGTGGACTTGATTGGAACCAAGCCTTATTGGAATCACAGAAATTGGAGCTTCCAATTCCAAAGCCTCATCATATCATGAAGAAACAACAACAGAATCAATCATCATCATCATCATCAGAGCCAATGAAGTGTCCAAGATGTGAATCTACCAACACAAAGTTCTGTTACTACAACAATTACAACAAGTCTCAGCCTCGCTATTTATGTAGAACTTGCAAGCGGCACTGGACCAAAGGTGGAACTTTGCGCAATGTTCCAGTTGGTGGTGGAAGAAAGAACAAAAGGGTAAAAAAATCAACCGCCACTGCAACCGCCACAGCCACCGCCACCACCTCTACTTGCACCACAAGCATCAGAATTCAAGCTCCTTCTCTTGCAATGGATGATCACAAAAACATAGCTTCTCCTTCTCCTTCTTCTTCTTCTTCCCTCTATCAAGGTCTGATTCGTCCACCACCTTTCCTACTACATCAGAATCTGATGAATAATATCATTACCAGAGGCATAACATCAGAAAGTAAAGGTTATGGTATTGGTAATAATAACAATAATACCAATGGCATCTTTCTTGGTTCATCAGCTTTGTCTCTTCCTCAGAATCAAGGCTTGCTTTTCCCCTTCTCAACTGCATCAAGCTCTAATTTTGACACAAACCCATGTTTAGTTTCAGTTTCAACCTCTTTGCAATCCACCAATGTTTATAATAACTGTGGTGGTGAAGAGTTTAAAGCAATAGAGGAACCAAGCATGCACAGCATAATGGCTACCACTACTTCTACACAACCATGGGAGATACCAGCAGCAACAATGGAAATGTCAAACTATTGGGGTTGGGAGGACATTGATTCTTTGGTCTCTACTGATCCGAACAACAATCATCCTTGGGATGATTCTGATATCAAACCCTGA 945 0.4138 MGLSSKQVSRSSSGLDWNQALLESQKLELPIPKPHHIMKKQQQNQSSSSSSEPMKCPRCESTNTKFCYYNNYNKSQPRYLCRTCKRHWTKGGTLRNVPVGGGRKNKRVKKSTATATATATATTSTCTTSIRIQAPSLAMDDHKNIASPSPSSSSSLYQGLIRPPPFLLHQNLMNNIITRGITSESKGYGIGNNNNNTNGIFLGSSALSLPQNQGLLFPFSTASSSNFDTNPCLVSVSTSLQSTNVYNNCGGEEFKAIEEPSMHSIMATTTSTQPWEIPAATMEMSNYWGWEDIDSLVSTDPNNNHPWDDSDIKP* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4056 314 ProSitePatterns Zinc finger Dof-type signature. 56 92 IPR003851 GO:0003677|GO:0006355
Amo13g4056 314 PANTHER OS06G0284500 PROTEIN 40 203 - -
Amo13g4056 314 ProSiteProfiles Zinc finger Dof-type profile. 54 108 IPR003851 GO:0003677|GO:0006355
Amo13g4056 314 MobiDBLite consensus disorder prediction 28 55 - -
Amo13g4056 314 MobiDBLite consensus disorder prediction 38 55 - -
Amo13g4056 314 Pfam Dof domain, zinc finger 53 106 IPR003851 GO:0003677|GO:0006355
Amo13g4056 314 MobiDBLite consensus disorder prediction 95 116 - -
Amo13g4056 314 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 203 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4056 Amo-Chr13 133519060 133520954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4056 54 118 C2C2-Dof Transcription Factor Family AT5G60200 68.182 2.89e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo13g4056 zf-Dof 7.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4056 - - gmx:100791855 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4056 13 133519060 133520954 Amo10g0242 10 2487509 2489250 PCT
Amo10g0242 10 2487509 2489250 Amo13g4056 13 133519060 133520954 PCT