Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4045 ATGAGTTGTGGCTGCTTTGGAGCCTCAACTCTCAAGAAGAAAAGTCCTTCTCCTACTCCCAATGAAATTGACGGCTATCCACTTGATAATGTTAGACATTTCTCTGACAAAGAACTGAGATTGGCTACTGATAATTATCATCCAAGATATAAGATAGGACGAGGAGGTTTTGGAATTGTTTACAAGGGAACCTTAAAAGATGGGAGACAAGTAGCAGTGAAGACCCTTTCAGCTGGGTCAAGGCAAGGAGTTCGTGAATTTTTAACTGAGATTAAAACTATATCAAATGTTAAGCATCCAAACCTTGTTGAATTGGTCGGTTGCTGTGTTCAAGGACCTAATCGTATACTAGTCTATGAGTATGTGGAAAATAACAGCCTTGATCGTGCATTACTTGGCACAAGGAGTATAAACATCAGACTAGACTGGAGAAAAAGATCTATTATTTGCATGGGCACTGCAAGGGGTCTTGCATTTCTTCATGAAGAACTTGTGCCACACATCGTGCACAGAGACATCAAAGCCAGCAACATACTACTCGACACAGACTTTAATCCAAAAATAGGAGATTTTGGGTTGGCTAAATTGTTTCCTGATGACATCACTCATATTAGCACAAGAATTGCTGGAACAACTGGTTACTTGGCGCCTGAATATGCAATTGGTGGCCAGTTAACCCTGAAGGCTGATGTATATAGTTTTGGGGTTCTTATACTTGAAATAGTTAGCGGCAGAAGCAGTTCAAGGACAAACTGGGGAGACTCATACAAACTCCTCTTGGAATGGGCATGGCAACTCCATGAAGAGGGGAAGTTGGTGGAGCTTGTGGATCCAGAAATGGGAGAGTTTCCTGAGGAAGAGGTGATTAGGTACATGAAGGTAGCATTCTTCTGCACACAAGCAGCTGCAAGCAGAAGGCCAATGATGTCACAGGTTGTTGATATGCTGTCCAAGAAAACAAAGCTCAATGAGAAGCAACTCACAGCACCAGGTTTCTTCCAAGACTCAGGAGAGTCCTCTCTAAAGAAGTCTTCTGGTGAGTCCACAAGCTATCAGTTTAGCTCTACCCCTGCCAGTATTACTCAGGTCAACCCCCGGTAA 1101 0.4287 MSCGCFGASTLKKKSPSPTPNEIDGYPLDNVRHFSDKELRLATDNYHPRYKIGRGGFGIVYKGTLKDGRQVAVKTLSAGSRQGVREFLTEIKTISNVKHPNLVELVGCCVQGPNRILVYEYVENNSLDRALLGTRSINIRLDWRKRSIICMGTARGLAFLHEELVPHIVHRDIKASNILLDTDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYAIGGQLTLKADVYSFGVLILEIVSGRSSSRTNWGDSYKLLLEWAWQLHEEGKLVELVDPEMGEFPEEEVIRYMKVAFFCTQAAASRRPMMSQVVDMLSKKTKLNEKQLTAPGFFQDSGESSLKKSSGESTSYQFSSTPASITQVNPR* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4045 366 PANTHER - 1 359 - -
Amo13g4045 366 MobiDBLite consensus disorder prediction 328 366 - -
Amo13g4045 366 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Amo13g4045 366 ProSiteProfiles Protein kinase domain profile. 46 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4045 366 Gene3D Phosphorylase Kinase; domain 1 19 121 - -
Amo13g4045 366 CDD STKc_IRAK 52 318 - -
Amo13g4045 366 Pfam Protein tyrosine and serine/threonine kinase 51 316 IPR001245 GO:0004672|GO:0006468
Amo13g4045 366 PIRSF ILK 8 329 - -
Amo13g4045 366 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 359 - -
Amo13g4045 366 SMART serkin_6 46 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4045 366 Gene3D Transferase(Phosphotransferase) domain 1 122 334 - -
Amo13g4045 366 SUPERFAMILY Protein kinase-like (PK-like) 29 346 IPR011009 -
Amo13g4045 366 MobiDBLite consensus disorder prediction 1 24 - -
Amo13g4045 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4045 Amo-Chr13 133380134 133384570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4045 34 354 Receptor kinase-like Gene Family AT1G56120 53.374 4.13e-111 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo13g4045 PK_Tyr_Ser-Thr 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4045 - - gmx:100775344 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4045 13 133380134 133384570 Amo10g0249 10 2542685 2545876 PCT
Amo10g0249 10 2542685 2545876 Amo13g4045 13 133380134 133384570 PCT