Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4034 ATGTCCATAAAGGAGGATGATGTTAAAAATGATTCTGATAATGATTTGGGTGATGATTTCGATTATCAACCGAATGCAGAAGATGATGCTGATGACGACGATGTGGATTCACTGGATTCCACTAGCAAGAGTGAAGAAGTTTGTGGTGTAAAAAGAATAGCGGATTTAATGGTAGAGGATATTTGGAACCTGGAGTTTAGGACGGAGGATGAGGCTTGCCAATTTTATAACGCTTATTCTTGTTGGCATGGATTTGTAATGAGGAAGGACGACGTGGTTAGGGATAATCAAGGTAGAATCATTAGCAGGCAACTTGTTTGCAATAAAGAGGGCTGGAGAAATATGAGGTATCTCGATCTGGATGATAGATCAAGGGAGGCAAGGTCACTAACGCGAACCAAGTGTCCAGCTCGGCTTAGGGTAAAGCTTGACTACGGCTGTCGTGGATGGAAGGTATCATGTTTTGTGGAATCTCACAACCACGATCTGACGCCACCCCAATTTGCGCATCTGGTACCGGCTAATCGTCGTCTCACTGTGACTGATAGAGTCCAAGTGAAAAATCTTCATAATTTTGGTGTCAAGAGCTGCCATATTATGGGGGCCTTAAAGGAGTATAGAAACAACGAGTTAATAGCTGACTTTAAGTCTCAGTGCTCAGAGCCAGTGATGATTACCTCGTTGGAGGTATATAAAAGATCTGCATCATGTTATTTCACGCGAAACATTTTCAAGGAAATTCGTAATGAGATTCAGAGGGCAGGGGCTTTGAATATAACGGTACTAAGCACAACCTTGGACAAGGTAGAGTTCAGTGTGACTGCTCTCGRAGACCCGGGCAAAGATCGACGGGTGGAAGTCGATAGAGGTAAGAATCTGTTCTCGTGCTCGTGCAAGCTGTTTGAATCACGTGGTATTCCCTGTAGTCATATCTTCTGTGCCATGAAGTTCGAAAACATACTTGAGTTTCCAGATTCGTTGATATACAAGAGGTGGACAAAGAATGCAAAGAACGAATTTATTAGCACAGAAATGCCTGTGAATGATGACATCGAAAGGGTCTTAAAGTTTCGAGTTGGAGCATTGGCATCGAATTGCAACAAGCTGTGTGATATTGCTTGCAAGGATCTTGCAGACTTTGATGAAGTCCAGTCTGAACTTGTCAATTTAGTTATCCGCCTGCAGTCACGCAAACAGGGCAAGTCAACTCCTAATGTTAACGTGGAAGGCATCAACGATCCCTTTGTTGTCAAAAGCAAAGGAGCCCCTTCCAAGAGGTCTTCTTGGAGGAAGAAGAGAGCATGCTCTAATTGCCACAAGTACGGTCATTACTACAAGCGCTGTCCAGATCTGATGCAGCATAGTGTGGAAGGTAACCCTCGCGATCAATCATACGGCAATGCATCAGCCAAGGACTCAGGTTTTAGTCCAGAAAGGTTTGCTAATTCTTCGAGGTCGTTCTCAATTAAGTCCGAACACCACTCAGGACCTAATACTAAGCCTTTTAAAAAGGGAGGAACAAGGAAGTTTACGGCGACGGGTATGAGGAACTGGAAGGGTAAAGATAACACCTTTGTGGAGCGGAGCCTCCATGAAAGCAGCGAATCCATTGACATCGCGTCCACGAATGGTGTTTTCAATAAAAATCTCGACTCGTTAACACAGCAGGTGAAGGAGTCACAGCAGGACAAGAGACATTCATTCACGAACTATGAATGCAATAATGATGTCATTGATAATAAATGTGACACACGACATGTGCAGATGGATGTCCGAGATCAGTTACCGTCGTCACTGCCTTGTGGCAACAAACAAGGATCGTACATGGCATTGTTCGTGTCGATGCATAGGACACTTTGA 1860 0.4392 MSIKEDDVKNDSDNDLGDDFDYQPNAEDDADDDDVDSLDSTSKSEEVCGVKRIADLMVEDIWNLEFRTEDEACQFYNAYSCWHGFVMRKDDVVRDNQGRIISRQLVCNKEGWRNMRYLDLDDRSREARSLTRTKCPARLRVKLDYGCRGWKVSCFVESHNHDLTPPQFAHLVPANRRLTVTDRVQVKNLHNFGVKSCHIMGALKEYRNNELIADFKSQCSEPVMITSLEVYKRSASCYFTRNIFKEIRNEIQRAGALNITVLSTTLDKVEFSVTALXDPGKDRRVEVDRGKNLFSCSCKLFESRGIPCSHIFCAMKFENILEFPDSLIYKRWTKNAKNEFISTEMPVNDDIERVLKFRVGALASNCNKLCDIACKDLADFDEVQSELVNLVIRLQSRKQGKSTPNVNVEGINDPFVVKSKGAPSKRSSWRKKRACSNCHKYGHYYKRCPDLMQHSVEGNPRDQSYGNASAKDSGFSPERFANSSRSFSIKSEHHSGPNTKPFKKGGTRKFTATGMRNWKGKDNTFVERSLHESSESIDIASTNGVFNKNLDSLTQQVKESQQDKRHSFTNYECNNDVIDNKCDTRHVQMDVRDQLPSSLPCGNKQGSYMALFVSMHRTL* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4034 619 MobiDBLite consensus disorder prediction 1 40 - -
Amo13g4034 619 MobiDBLite consensus disorder prediction 453 509 - -
Amo13g4034 619 PANTHER OS03G0181600 PROTEIN 57 191 - -
Amo13g4034 619 PANTHER OS03G0181600 PROTEIN 202 387 - -
Amo13g4034 619 ProSiteProfiles Zinc finger SWIM-type profile. 283 319 IPR007527 GO:0008270
Amo13g4034 619 MobiDBLite consensus disorder prediction 12 39 - -
Amo13g4034 619 SMART 26again6 294 321 IPR006564 GO:0008270
Amo13g4034 619 Pfam FAR1 DNA-binding domain 74 164 IPR004330 -
Amo13g4034 619 SUPERFAMILY Retrovirus zinc finger-like domains 421 453 IPR036875 GO:0003676|GO:0008270
Amo13g4034 619 MobiDBLite consensus disorder prediction 457 495 - -
Amo13g4034 619 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 57 191 IPR031052 GO:0006355
Amo13g4034 619 ProSiteProfiles Zinc finger CCHC-type profile. 435 450 IPR001878 GO:0003676|GO:0008270
Amo13g4034 619 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 202 387 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4034 Amo-Chr13 133187583 133190574 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo13g4034 FAR1 5.2e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4034 - - ahf:112755379 741.495