Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4027 ATGGATGATTCAAGCTCAGATTGTCAGCTGAATCAGGGCGAAGTGGATTATGAATTTGAATCTAACGAAGTTCCTGAGACGCTCGGGTGTAGATCAGAGCTTTTTTGGGTGTATTTTTGCGAGAAGTCTGAGTTGTTGTCGTTCGGAGTTCGGAGCACAAATAGGAAGGAAAACGAGATTAAGAATCAATTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACCAATCCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCCTGCTGTCCAAGTAAAGCAGAGGTGTTCAAACAGTACAGGGAACTAAGCATGTCCATTCGTCGTACAATAGAGAATAACGAGGAGGCCGGTATCAGACCAAACCGTCACATATGGGTTCCTATCTATCTAGATCACCACTTCTGGGCAGGGATGAGAAGCACACAAAGTAGCAAGAGCATGCATTCATTTTTTAACAAGTTTATCACCCGGAACAGCTCGCTTATTCAGTTCGTCAAACAATACGATAATTGCCTCGGAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCACACGGTCATACCGTGTCCAACCAAATCGTCCATTGAAGCTCAGTTTCAAGATGTGTACACTCATCAAAAGTTTAGGGAAGTCCAAGCGCAATTCAGAGGAAAGGCGAATTGCATCACCAAATTAACGAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAGTTGCAGCCGAGGTAAAATGCCAATGCTTATTATTCGAGTCGAGAGGGATACTGTGTCGTCACGCACTAAGCGTGTTAAGCTTTGAACAAGTAAGCCAAGTGTCACCTAGATATATACTGGAACGATGGAGCAAGAAGGTAAAGAGGTGA 1020 0.4343 MDDSSSDCQLNQGEVDYEFESNEVPETLGCRSELFWVYFCEKSELLSFGVRSTNRKENEIKNQLITCSREGKWKSKISPTEKTNPTAGLNCPARIYIHTLKDVGAWIISKVVLDHSHPCCPSKAEVFKQYRELSMSIRRTIENNEEAGIRPNRHIWVPIYLDHHFWAGMRSTQSSKSMHSFFNKFITRNSSLIQFVKQYDNCLGSREQAERESDAADFHTVIPCPTKSSIEAQFQDVYTHQKFREVQAQFRGKANCITKLTNSALGYSVYEVGEQVSSSIFNKFVVTYDSVAAEVKCQCLLFESRGILCRHALSVLSFEQVSQVSPRYILERWSKKVKR* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4027 339 ProSiteProfiles Zinc finger SWIM-type profile. 284 320 IPR007527 GO:0008270
Amo13g4027 339 SMART 26again6 295 322 IPR006564 GO:0008270
Amo13g4027 339 Pfam SWIM zinc finger 286 317 IPR007527 GO:0008270
Amo13g4027 339 PANTHER OS03G0843700 PROTEIN 152 339 - -
Amo13g4027 339 PANTHER OS03G0843700 PROTEIN 56 132 - -
Amo13g4027 339 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 152 339 IPR031052 GO:0006355
Amo13g4027 339 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 56 132 IPR031052 GO:0006355
Amo13g4027 339 Pfam FAR1 DNA-binding domain 52 120 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4027 Amo-Chr13 133093496 133095959 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo13g4027 FAR1 1.2e-06 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4027 - - adu:110280503 356.681