Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4018 ATGGCCTTTGATCATAACTACTATTCCCGGGGATGTAAAACTCTGCCAAATTCCCTTATAGACACAGAAAATTATAACAATTCCAATGGTTGTTTCGATTGCAACATATGCTTAGACTTTGCAAACGAGCCAGTTGTCACGCTTTGTGGCCATCTCTACTGCTGGCCCTGCATCTACAAATGGCTCCATGTCCAGAGCGCTTCCCTTGCCTACAACCAGCAGCCGCTATGCCCTGTCTGCAAAGCTGAAATATCCCATGCCACGATGGTTCCCCTCTACGGCCGTGGCCACAGCAACCGTGAAGAGAAGGCGGCCTCATGCAGGGACATTTGTGTCCCGCCGAGGCCACCTGCTTCTGGTCCCCTGTCTTTGCTGTCCATGTCTCAAAACGGCCAGCAGCGGCTTCCTTATCGGAATCCTTACCAGGGTCAACACTTTAGCGTTGCGCAAGACGAGGACAACGCATCGCAAATGCTGAATCTTGGTGCTTCTGTAACGCCGGCATTCCTCCCCCACCCTATGGTTGGAATGTTTGGGGAGATGTTCTACACCAGAGTGTTTGGCAACTCAGAAAGTTTGTATGGATACCCAAATTCTTATCACACGATGGGAAGTATTAGCCCTAGGTTGAGAAGGCAAGAGATGCAGGCAGATAAGTCATTGAACAGAATCTCCATTTTCCTGCTATGTTGCTTTATTCTATGTCTTATTGTCTTTTGA 720 0.4861 MAFDHNYYSRGCKTLPNSLIDTENYNNSNGCFDCNICLDFANEPVVTLCGHLYCWPCIYKWLHVQSASLAYNQQPLCPVCKAEISHATMVPLYGRGHSNREEKAASCRDICVPPRPPASGPLSLLSMSQNGQQRLPYRNPYQGQHFSVAQDEDNASQMLNLGASVTPAFLPHPMVGMFGEMFYTRVFGNSESLYGYPNSYHTMGSISPRLRRQEMQADKSLNRISIFLLCCFILCLIVF* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4018 239 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Amo13g4018 239 Pfam Zinc finger, C3HC4 type (RING finger) 34 80 IPR018957 GO:0046872
Amo13g4018 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 239 IPR045103 GO:0005783|GO:0006511|GO:0061630
Amo13g4018 239 CDD RING-HC_AtRMA_like 32 82 - -
Amo13g4018 239 SMART ring_2 34 80 IPR001841 -
Amo13g4018 239 ProSiteProfiles Zinc finger RING-type profile. 34 81 IPR001841 -
Amo13g4018 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 94 IPR013083 -
Amo13g4018 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 6 239 - -
Amo13g4018 239 SUPERFAMILY RING/U-box 30 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4018 Amo-Chr13 133030979 133032749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4018 22 225 C3H Transcription Factor Family AT4G27470 41.364 5.36e-44 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4018 K10666 - gmx:100816864 296.975