Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4017 ATGGCGTCGCTGTTCGGTTCGTCGTCGGGCTCCACATCGATGGTGGTGACGAACACGCCGTCGCAGGACCTTGCCCTCACCAACCTCGCCTTCTGTTCCTCCTCCGATCTCCGCAACTTCGCCGTCCCCAATCGCTCCAACCTCTTCCTCGCCTTCGTTGGCGACTCCTTCGTCTTCTCTCTCTCATATCCTTCGCCACCGCCTTTCATTTCAGTTTTCTTAACATATACAGCTCATGAGAACATTCGCAGTGGCCAGATTGCTCTCAATTCCATTCAACGTCGCTGTGTTAAAGTCTCCGCTGCTGAATCCATTCCTGTCACCAGATTTGTGCCACCTGAAAACTTCGACCTGGCATTGTTAACCCTTGAACTGGAATTCATTAAAAAAGGAGCAAAGAGTGAACAGATTGATGCTCCCCAACTGTCTAAGCAACTTCGGAAAAGGTTCGCAAACCAGGTTATGACAGTAGGGCAGAAAGTGTTATTTGAGTATCATGGAAATAATTATAGCTTCACAGTTACTCAAGCTGCTGTTGAGGGTCAAGAAAAGACTAATGCTCTTGAAAGAGGGATGATCTCAGATGACACATATGTTGTTTTTGAAACAGCACGTGATAGTGGAATCAAGATTGTCAATCAGCGTGAGGCTGCCACTAGCAACATTTTTAAGCAGAAAGAGTTTAATCTTCAGTCTCTGGGTATTGGAGGCCTGAGTGCAGAGTTTGCAGATATATTTCGAAGAGCTTTTGCCTCCCGTGTTTTCCCTCCCCACGTGACATCGAAATTAGGGATCAAGCATGTGAAGGGCATGTTGCTTTATGGCCCACCTGGAACTGGAAAGACTCTTATGGCCCGGCAAATTGGGAAAATTCTGAATGGGAAGGAACCAAAGATTGTAAATGGCCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTGAGGGACCTTTTTGCTGATGCTGAACAAGAGCAGAGGAGCCGAGGGGATGAAAGTGATTTGCATGTAATTATCTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGTTCAACTCGCGATGGTACTGGAGTTCATGATAGCATTGTGAACCAGCTTCTTACTAAGATAGATGGTGTGGAGTCACTAAATAATGTTTTGCTTATTGGAATGACTAACAGAAAGGATATGCTTGATGAGGCTCTCTTAAGACCAGGGCGGTTGGAAGTCCAGGTTGAGATAAGCCTTCCTGATGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAACAAGATGAAAGAGAATTCTTTTCTTGCTCCCGATGTGAATCTTCAAGAGCTCGCTGCTAGAACAAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCCGTCTCATATGCTTTAAATCGACAACTGAGTCTAGAGGATCTCACGAAGCAAGTTGAGGAAGAGAATATTAAGGTTACCATGGATGACTTTTTGAATGCACTCCAAGAGGTTATTCCTGCATTTGGGGCTTCCACTGATGATCTTGAAAGATGCAGACTCCATGGCATGGTTGACTGTGGTGACCGACATAAGCACATCTATCAAAGAGCAATGCTACTAGTGGAGCAAGTAAAAGTAAGCAGAGGAAGCCCACTTGTTACTTGTCTTCTGGAAGGTTCCAGTGGCAGTGGTAAGACCGCACTTGCAGCTACTGTTGGTATTGACAGTGACTTCCCATATGTCAAGATTGTTTCAGCTGAAACAATGATTGGACTACATGAGAGCACTAAATGTGCACAGATTATTAAGGTTTTTGAGGATGCATATAAGTCACCGTTGAGTGTTATTGTCCTTGATGACATTGAGAGGTTATTGGAGTATGTAGCCATTGGTCCCCGGTTTTCAAACTTGATTTCTCAGACACTATTGGTCCTACTCAAACGGCTTCCTCCAAAGGGGAAAAAACTCATGGTTATTGGTACAACAAGCGAATTGACTTTCTTGGACTCGATTGGATTTTGTGATACTTTCTCTGTCACTTACCATGTTCCTACCTTGAACACAAATGATGCCAAGAAGGTCCTAGAACAGTTGAATGTTTTTGCTCATGAAGATATTGATGCTGCTGCAGAAGCAATGAATGATATGCCTATTAGGAAGCTGTACATGTTGATTGAGATGGCAGCACAAGGGGCTCAAGGTGGATCTGCAGAAGCTATCTATTCTGGCAAAGAGAAGATCAGTATCTCTCATTTCTATGATTGCCTCCAGGATGTTGTCAGAATATAA 2277 0.4352 MASLFGSSSGSTSMVVTNTPSQDLALTNLAFCSSSDLRNFAVPNRSNLFLAFVGDSFVFSLSYPSPPPFISVFLTYTAHENIRSGQIALNSIQRRCVKVSAAESIPVTRFVPPENFDLALLTLELEFIKKGAKSEQIDAPQLSKQLRKRFANQVMTVGQKVLFEYHGNNYSFTVTQAAVEGQEKTNALERGMISDDTYVVFETARDSGIKIVNQREAATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQEQRSRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLEDLTKQVEEENIKVTMDDFLNALQEVIPAFGASTDDLERCRLHGMVDCGDRHKHIYQRAMLLVEQVKVSRGSPLVTCLLEGSSGSGKTALAATVGIDSDFPYVKIVSAETMIGLHESTKCAQIIKVFEDAYKSPLSVIVLDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGKKLMVIGTTSELTFLDSIGFCDTFSVTYHVPTLNTNDAKKVLEQLNVFAHEDIDAAAEAMNDMPIRKLYMLIEMAAQGAQGGSAEAIYSGKEKISISHFYDCLQDVVRI* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4017 758 Pfam Cell division protein 48 (CDC48), domain 2 136 181 IPR004201 -
Amo13g4017 758 ProSitePatterns AAA-protein family signature. 382 400 IPR003960 GO:0005524|GO:0016887
Amo13g4017 758 Gene3D - 509 680 IPR027417 -
Amo13g4017 758 SUPERFAMILY Cdc48 domain 2-like 113 216 IPR029067 -
Amo13g4017 758 Gene3D - 9 110 - -
Amo13g4017 758 PANTHER VESICULAR-FUSION PROTEIN NSF 80 757 IPR039812 GO:0016887|GO:0035494
Amo13g4017 758 Pfam ATPase family associated with various cellular activities (AAA) 552 665 IPR003959 GO:0005524|GO:0016887
Amo13g4017 758 Pfam ATPase family associated with various cellular activities (AAA) 271 411 IPR003959 GO:0005524|GO:0016887
Amo13g4017 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 510 IPR027417 -
Amo13g4017 758 Gene3D - 413 500 - -
Amo13g4017 758 Gene3D - 220 412 IPR027417 -
Amo13g4017 758 Gene3D - 114 211 - -
Amo13g4017 758 PANTHER BNAA03G50350D PROTEIN 9 39 - -
Amo13g4017 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 511 728 IPR027417 -
Amo13g4017 758 PANTHER BNAA03G50350D PROTEIN 80 757 - -
Amo13g4017 758 SUPERFAMILY ADC-like 11 110 IPR009010 -
Amo13g4017 758 CDD AAA 541 667 - -
Amo13g4017 758 CDD AAA 269 412 - -
Amo13g4017 758 SMART AAA_5 267 414 IPR003593 -
Amo13g4017 758 SMART AAA_5 547 685 IPR003593 -
Amo13g4017 758 Pfam AAA+ lid domain 438 493 IPR041569 -
Amo13g4017 758 PANTHER VESICULAR-FUSION PROTEIN NSF 9 39 IPR039812 GO:0016887|GO:0035494
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4017 Amo-Chr13 133011117 133018297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4017 262 478 Calmodulin-binding Proteins AT3G56690 39.819 1.43e-40 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4017 K06027 - gmx:100779259 1289.25