Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4016 ATGGATAGTAGTAATGTGTTAGAACTCAACCTTGGCGTAGGGAATAATGGTGGTGGCCAAGTAGGGCAGTCGGTGAGGCCACGGTGTCCGGCACCTTTTCTTTTGAAGACTTATGATTTGTTGGAAGAAAGCGGCAACGGCGGCAAGATAGTTTCATGGAATGGAGATGGGAGTGGTTTTATTGTATGGTCTCCGGCTGAATTCTCTGACCTCACCTTGCCTAGATTTTTCAAGCACAATAACTTCTCAAGCTTCATTCGCCAATTGAATACATATGGATTCAAGAAAATATCATCAAAAAGATGGGAGTTCAAGCATGAGAAATTTCAGAGAGGGTGTAGGGATATGCTAGTTGAGATCACAAGGAAAAAGTGCGAGCCTAGCGTGTTCCCTTCATACCTCAAGTCTTCTTCAGAGGAAAATGCAATCACTTCTAATAATTCAATGGAAGAAAGCAACAATAATAGCCATCAACTACTTATGGAGGAGAACAAGAACCTTAAGAAGGAGAGGTTGGAGCTGCAAATGCAGATAGCTGAGTTTAAATCACTTGAAATGAAGTTGTTAGAGTGTCTCTCTCAAGTTATGGACAACCACCAAAATAAAAGTCGGGGACAATGTTAG 624 0.4167 MDSSNVLELNLGVGNNGGGQVGQSVRPRCPAPFLLKTYDLLEESGNGGKIVSWNGDGSGFIVWSPAEFSDLTLPRFFKHNNFSSFIRQLNTYGFKKISSKRWEFKHEKFQRGCRDMLVEITRKKCEPSVFPSYLKSSSEENAITSNNSMEESNNNSHQLLMEENKNLKKERLELQMQIAEFKSLEMKLLECLSQVMDNHQNKSRGQC* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4016 207 Coils Coil 157 184 - -
Amo13g4016 207 ProSitePatterns HSF-type DNA-binding domain signature. 73 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g4016 207 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g4016 207 PRINTS Heat shock factor (HSF) domain signature 33 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g4016 207 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g4016 207 SMART hsfneu3 29 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g4016 207 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 203 IPR027725 -
Amo13g4016 207 Gene3D - 26 124 IPR036388 -
Amo13g4016 207 Pfam HSF-type DNA-binding 33 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g4016 207 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A-LIKE 22 203 - -
Amo13g4016 207 SUPERFAMILY "Winged helix" DNA-binding domain 30 123 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4016 Amo-Chr13 133001419 133004117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4016 29 184 HSF AT5G62020 40.331 1.66e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Amo13g4016 HSF_DNA-bind 1.1e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4016 K09419 - gmx:100789792 295.434