Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4008 ATGTCTTTTAACAAAAATGTTGGAAGCAAATCTGGGATGGTGGAATTTGTAGGCCCTAATGGGGAGGTTTTCATGTGTAGAAGTGATGTGGAGATTGGTTTGTCTCACCAAGATGCATTGATTGAACTTGGTTGCTGTTGTAAGAATGACCTTGCTTTAGTACACTATGCTTGTGCACTCAAGTGGTTTATTAATCATGGATCAACAATTTGTGAAATATGTGGACACATAGCCAATAATATCAGAATCTCTGACTTCAACAAGGTTGTTGGTTCTCTGAAGGAATATGAAGCCTTGAGGGAGAGAACTGTCAGTGGGGATCCTGGTCCTCATGTTCATGAGAATAATAATACTGGCGTTGATCCTGACGCTGTGGCTGCTATCCGGAGGCAGCGGCTAAGTGAGATTGCATTATGGTTTTGTCCTCATAATACCAGTAGTATAAATAACAATAGCAATGCCGACACAGTTTCACAGGTGGCTTCTGAGCAGCCTTCAAATTTTGTTACTGAAGATGCTGGCCTTGCACAGAGTCCTGCAACCAAGTGGGCCGTGGAAGGCACAGGGATCCTGCTTGCTACTGGCCTGCTTACAATCACCCTTGCGTGGCTGATAGCTCCCCGAGTTGGAAAGTTTGTGCTTACCAGAATCAAGTACGGACCTGCACGTTATTGGGCAATCTTATTCGTTTTCTGGTTTCTTGTGTTTGCAATATGGGCTTCACGGACACATGGCATAGCCAAGATGCTAGAAGAGAAGGAGAAGGAAATTCTTGATGCTCTTAATAAAGACCTTTCTAAACCAGGATTGGAAGGATATATATCTGAGGTCTACAATTCCTACTTTCATTTTCTGCTTCATGATTTTCTCTTTTTAACCACAATTCTTTGGCGAAGATCTGATGGAATCAAAAGACATGTCTCGTATTGTGTCCCCGACCCAGTTTTCCCGGCTGGTGAAGCTCTTGGATGA 972 0.4321 MSFNKNVGSKSGMVEFVGPNGEVFMCRSDVEIGLSHQDALIELGCCCKNDLALVHYACALKWFINHGSTICEICGHIANNIRISDFNKVVGSLKEYEALRERTVSGDPGPHVHENNNTGVDPDAVAAIRRQRLSEIALWFCPHNTSSINNNSNADTVSQVASEQPSNFVTEDAGLAQSPATKWAVEGTGILLATGLLTITLAWLIAPRVGKFVLTRIKYGPARYWAILFVFWFLVFAIWASRTHGIAKMLEEKEKEILDALNKDLSKPGLEGYISEVYNSYFHFLLHDFLFLTTILWRRSDGIKRHVSYCVPDPVFPAGEALG* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4008 323 SMART ringv_2 26 75 IPR011016 GO:0008270
Amo13g4008 323 PANTHER ZINC FINGER, RING-CH-TYPE 213 248 - -
Amo13g4008 323 PANTHER ZINC FINGER, RING-CH-TYPE 4 211 - -
Amo13g4008 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 84 IPR013083 -
Amo13g4008 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 4 211 - -
Amo13g4008 323 SUPERFAMILY RING/U-box 37 77 - -
Amo13g4008 323 Pfam RING-variant domain 40 74 IPR011016 GO:0008270
Amo13g4008 323 ProSiteProfiles Zinc finger RING-CH-type profile. 15 81 IPR011016 GO:0008270
Amo13g4008 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 213 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4008 Amo-Chr13 132889360 132894672 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4008 6 239 C3H Transcription Factor Family AT5G08750 60.674 3.11e-103 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4008 - - gmx:100805323 377.481