Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4003 ATGGAGAATTATACATATCCACCGTATCCTGAATCCAGCGAGTCGTCGCCGCGGTCGAGGGAGGTCGACTTCGAGAATCCGCCGCCGTGGGACGAGCAGCAGCCGCCGCCGACAAATTSCAAGGCCAAGTTCATGTGCAGCTACGGCGGCAAGATCCAGCCGCGCAGCCACGACAACCAGCTCTCCTACGTTGGCGGCGACACCAAGATCCTCGCCGTCGACCGCAACATCAAGTTCCCCGCCTTCCTCTCGAAGCTCGCRGCCCTCTGCGACTGCGCCTCGCCTGAGAACCTCACTCTCAAGTACCAGCTCCCCGGAGAGGACCTCGACGCCCTCATCTCCGTCACCACCGACGACGACCTCGATCACATGATGCATGAGTACGATCGCCTCTTCCGTGCCTCCGCAAAACCCGCCAGGATGAGGCTCTTCCTCTTCACCGCCTCAACTACCTCCGCTCCACCTAGTTTCTCCACTGATCGCGATCGCTTCGTMGAGGCTCTCAACTCGGGTCCCGTTCCGGTRCAACCCGATCCGGTCAAACCCCCTCCTGTTGCTCCTGCCAACGTTGATTTTCTATTCGGGCTTGAGAAGGCCGCGCCTCCTCCCCCTCAGCCGGCACCGCCTCTCGCCACCGTTAAGTTCCACGATCCTGTTCCGGAGCCTGTGGCGCCGCCACCGGAGTACCAGACGCGCGCAGCTGTGAACGATCGGGTTATTGGATCGGATCCCACCGTGAACCCGATCGACGTTCAAAGGCAGTTGCAGCAAGAGCTGCAGCGGTTGCAGATCGCGGAGGCTGATCAGTCTATGTACCGGAGGAGAAGTGAGGATGGCTTCGCTGGAGGTTATGGTGTTGCTGGGGGCGGCGATTATTACATGCAGAAAATGCCAGAGAAGGTTCCGATGTCGAATTCACCTGCTACTGTGCAGCACCCCGGGAATTACTGGCCGGAGAAGCAGTTTTCTGGTGAAGGTTTCCCAACGGCAATTTCGACGGCTCCCGGAGGTGGAGACCAACAGTTTTACGTTGTTCCGGCGCCGGGCACGTTCTATCATGCTCCAGTTGTGCGTCCGTCGGCGGCGCCGGTCACTCAAGGTTACTACGCTGTGCAACGTATGAYTTCTGATGGATACCGTGAGCAGCCAGTGTACGGCGGCGCGCAGCCAGCTAAAGCAGCRTTTTCGTCTGCGGGAGCCACAAATATGGCACAGGCTCCACCGGMTAAGGCCCCTGGTTATCCAGAAGGATACGGCGTGGTTCGGCCAGCTGGAGTGCCGGATAATGTGGGGTCTGCTGCGTACGCGCAAGTTGCCTACGATAGTGGGAGTGGGAGACAGGTTTATTATACTGCGCCGGCTGGCGTCATGCACGCGCCGCAATATCAAGGGATTCCTCCACCGGTTACTGCTGCTGGGGGTTCGTTGGGCCAGGATGCTAGTAAAGTGGTAAACAAGGCTTCCCAAGGTTCTGTGTGA 1479 0.5882 MENYTYPPYPESSESSPRSREVDFENPPPWDEQQPPPTNXKAKFMCSYGGKIQPRSHDNQLSYVGGDTKILAVDRNIKFPAFLSKLAALCDCASPENLTLKYQLPGEDLDALISVTTDDDLDHMMHEYDRLFRASAKPARMRLFLFTASTTSAPPSFSTDRDRFVEALNSGPVPVQPDPVKPPPVAPANVDFLFGLEKAAPPPPQPAPPLATVKFHDPVPEPVAPPPEYQTRAAVNDRVIGSDPTVNPIDVQRQLQQELQRLQIAEADQSMYRRRSEDGFAGGYGVAGGGDYYMQKMPEKVPMSNSPATVQHPGNYWPEKQFSGEGFPTAISTAPGGGDQQFYVVPAPGTFYHAPVVRPSAAPVTQGYYAVQRMXSDGYREQPVYGGAQPAKAAFSSAGATNMAQAPPXKAPGYPEGYGVVRPAGVPDNVGSAAYAQVAYDSGSGRQVYYTAPAGVMHAPQYQGIPPPVTAAGGSLGQDASKVVNKASQGSV* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4003 492 CDD PB1_UP2 45 146 - -
Amo13g4003 492 MobiDBLite consensus disorder prediction 1 15 - -
Amo13g4003 492 MobiDBLite consensus disorder prediction 1 42 - -
Amo13g4003 492 PANTHER OS05G0427100 PROTEIN-RELATED 1 488 - -
Amo13g4003 492 MobiDBLite consensus disorder prediction 196 228 - -
Amo13g4003 492 Gene3D - 62 148 - -
Amo13g4003 492 MobiDBLite consensus disorder prediction 467 492 - -
Amo13g4003 492 SMART PB1_new 56 148 IPR000270 GO:0005515
Amo13g4003 492 MobiDBLite consensus disorder prediction 199 227 - -
Amo13g4003 492 MobiDBLite consensus disorder prediction 303 333 - -
Amo13g4003 492 SUPERFAMILY CAD & PB1 domains 57 152 - -
Amo13g4003 492 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN PROTEIN 1 488 - -
Amo13g4003 492 Pfam PB1 domain 57 147 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4003 Amo-Chr13 132756922 132758798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4003 41 169 MAP Kinase Kinase Kinase AT3G46920 42.754 2.53e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4003 - - adu:107480527 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4003 13 132756922 132758798 Amo20g0447 20 5525318 5527215 PCT
Amo20g0447 20 5525318 5527215 Amo13g4003 13 132756922 132758798 PCT