Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4002 ATGCCTCCTCCATTTGATATGATTTCCAAGATGCATCCTCCTAGAGAGGCTTGGAGGCTGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCCTCTTTTGGTAACCATGAGGTTTCTAACACAATGGAGATGATTCTCCTTGATGAGCATTGTGAAAAAATTCAAGCTACAGTTAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGTCAAGTTTATAGAATGGCATACTTTACTGTTGTGTCAAATCATGATAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTATTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTACCTTTTTCTGAGCTGTTGAACATGACCCAAGATTATGAATTTTTAGTTGATGTCATTGGTCTTTTAACTTTAGTGGGAGAAGAGAAAGAATATGCAAAAAAGGAGAAAATTGTGAAAATGATTGTGCTGAAATTAACTTCAAAAGATTTCAATCTTACAGTGCGCTGTGCATTATTTGGGGACTATGTTAATCAAGTAAATCATTTCCTTACCTCTGGCTATGTGGAGCAGCCTGTTGTATTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGCCTTCAAAATGTCATGTATGCCACTCAAATATTATTTAATCCTAATTTTCCAGAAGTTGTTGAATTCAGTATAGTTGAGCAAGGTGTCAATGGTACCCAGCCACTGTTTATTGCAAATGAGGGTAAAGTTGTCTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTGAAGAGCTTCAAGATAACAATGAGGAGGGTTCTTTTATCATTTTTGGTACAATCCAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTGACTCCAAGATTTAAAATTAAAATAACACTTCAAGATCATAGTGGGGAGGGTATTTTCCTTCTCTTTGATCGTGAGGCATCTTATTTGCTTAAGAAATCATGTGCTGACTTGTTTACCGAGCTTGTATGTGGGGATACTTATCCTCCCATATTCCAACGACTCATTGGAAAGAAGCTACTGCTGAAGGTTGATACCAAAGGAGTGCCACATGATACATTTTATGGCAGTTTCCGAGTTAGGAGAATATGTGATGATCCCACCATTATTGCCATGTTTGAGCTTCCGAATTATAATGTTGATGATGAGTCTACTCCAAAAAAGGAGCCTAATTTACACAAATCTATTCCCTGTGGAGAAGGGGATGTTGGTATTAAAAAGGAGTCATCAAAGACTTTTATCAAAAGTGAGAAAGTTGGTGGGACTGAGTTTGCTTCCTTAATTAATGGTGAACATGGAAAAGATGAGAAAACACCTAGCAATGATACTGAGGTGTTGTCCCATGTTATTGATGCACCTTTCCATTATGGAGAGAAGCTTATTCATGAAAATTATGTTGTCACTTCCAAGGGCAAGAGAAATCTGAATCCCCAATTTGAAGAGGCAGCTGCTGATGTAGATGGGCCTGGGTTCAAGATTGCCAAGGTTAATGGAGTTTGA 1659 0.3779 MPPPFDMISKMHPPREAWRLKVRVLRLWVVPSFGNHEVSNTMEMILLDEHCEKIQATVKKPLLNRFRDHIVEGQVYRMAYFTVVSNHDSYRATSHEFKLVFLHRTTIVAVDEDVIPKTCFNMLPFSELLNMTQDYEFLVDVIGLLTLVGEEKEYAKKEKIVKMIVLKLTSKDFNLTVRCALFGDYVNQVNHFLTSGYVEQPVVFIQLAKVKFFRGQVGLQNVMYATQILFNPNFPEVVEFSIVEQGVNGTQPLFIANEGKVVSLEDDFMRLTRKCTIEELQDNNEEGSFIIFGTIQGIVEDGGWWYSACVCGKGIYPQNGAYYCDFCLKHITNVTPRFKIKITLQDHSGEGIFLLFDREASYLLKKSCADLFTELVCGDTYPPIFQRLIGKKLLLKVDTKGVPHDTFYGSFRVRRICDDPTIIAMFELPNYNVDDESTPKKEPNLHKSIPCGEGDVGIKKESSKTFIKSEKVGGTEFASLINGEHGKDEKTPSNDTEVLSHVIDAPFHYGEKLIHENYVVTSKGKRNLNPQFEEAAADVDGPGFKIAKVNGV* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4002 552 SUPERFAMILY Nucleic acid-binding proteins 274 419 IPR012340 -
Amo13g4002 552 Gene3D - 4 112 IPR012340 -
Amo13g4002 552 Gene3D - 265 420 IPR012340 -
Amo13g4002 552 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 372 - -
Amo13g4002 552 CDD RPA1_DBD_A_like 19 107 - -
Amo13g4002 552 PANTHER REPLICATION FACTOR A 1, RFA1 22 372 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo13g4002 552 Pfam Replication factor-A C terminal domain 291 373 IPR013955 -
Amo13g4002 552 Pfam Domain of unknown function DUF223 43 136 IPR003871 -
Amo13g4002 552 Gene3D - 114 247 IPR012340 -
Amo13g4002 552 SUPERFAMILY Nucleic acid-binding proteins 120 240 IPR012340 -
Amo13g4002 552 CDD RPA1_DBD_B_like 140 243 - -
Amo13g4002 552 SUPERFAMILY Nucleic acid-binding proteins 3 112 IPR012340 -
Amo13g4002 552 CDD RPA1_DBD_C 277 414 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4002 Amo-Chr13 132735256 132738131 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4002 11 371 Core DNA Replication Machinery Family AT5G08020 23.138 2.31e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4002 - - adu:107471135 852.818