Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3986 ATGCAACCAATGATTATGTTTCCCGGTCTGAATAAAGAGGAGGAGATGTATACTATGGTTGAGGCTTTGACTCATGTTGTTCGTGGAGAAATACCTCAAGAAGCTGCTGATGTTGCTGTGACATCTAACATGGCTTCTGTGTCTGCAACACCATCTACGTCCTCCTCATCTTATGGACTCAATTCTAATCTCAAAAGAAGTAGGGAAGATGATATACCCTTTCTTGCTTCATCCTCTGCTGCTATTCCACCAATTTCAGAGCTTGCAATCAACGGGAAAACAAGAAGAGAAAGAAGCGAAATGGGAGATGATGCAGTAGTGTACGAATACAGAACAGATCTAAAGAAGAATGATGAGGAGAAGAGGAAGAACAATGAAGGGAAGAGAAAATACAGAGGAGTGAGGCAGAGGCCATGGGGGAAGTGGGCTGCAGAGATCAGAGATCCATTCAAAGCAGCAAGAGTGTGGTTAGGAACCTTCAACACTGCAGAGGCTGCTGCCATTGCTTACGACCAAGCCTCTCTCCGCTTCAGAGGCAACAAAGCCAAACTCAACTTCCCTGAAAATGTTAGGGTGAAGCAACCACCACCACCACCAACCGCTTTCACCATTTCTCATACTGCTTCTTCTCCTTCTTCTTCTGATGCATATGTGCCCCTTCCACCTTCCACCGTGGAGGCTTCACCACCCAAGTTTTATGAGTTTTCAGACTTCCCCATCAGTTTATACGATCAGATGTTTGTGTCGTCTGCAATGGCTTCTCATATTCAAGCTTCTTCGGCTTCATCGCCAGCGGCATCGAATTCTTCCTCTTCTTCAGTGTTTGCTTATTCTGTAACTTCTGCCACACAGGCAACTCCAATTCCTTCTGTTTATTCTGCTAAGCTGCCGCCATGGTCTTCTTCTGGTAATAGCTCCTCTCCTTCTAGATGA 933 0.4544 MQPMIMFPGLNKEEEMYTMVEALTHVVRGEIPQEAADVAVTSNMASVSATPSTSSSSYGLNSNLKRSREDDIPFLASSSAAIPPISELAINGKTRRERSEMGDDAVVYEYRTDLKKNDEEKRKNNEGKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFNTAEAAAIAYDQASLRFRGNKAKLNFPENVRVKQPPPPPTAFTISHTASSPSSSDAYVPLPPSTVEASPPKFYEFSDFPISLYDQMFVSSAMASHIQASSASSPAASNSSSSSVFAYSVTSATQATPIPSVYSAKLPPWSSSGNSSSPSR* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3986 310 CDD AP2 130 189 IPR001471 GO:0003700|GO:0006355
Amo13g3986 310 PANTHER DNA-BINDING DOMAIN 37 304 IPR044808 GO:0003700|GO:0009873
Amo13g3986 310 PRINTS Ethylene responsive element binding protein signature 153 169 IPR001471 GO:0003700|GO:0006355
Amo13g3986 310 PRINTS Ethylene responsive element binding protein signature 131 142 IPR001471 GO:0003700|GO:0006355
Amo13g3986 310 PANTHER DNA-BINDING DOMAIN PROTEIN 37 304 - -
Amo13g3986 310 MobiDBLite consensus disorder prediction 189 217 - -
Amo13g3986 310 Gene3D AP2/ERF domain 129 189 IPR036955 GO:0003700|GO:0006355
Amo13g3986 310 MobiDBLite consensus disorder prediction 291 310 - -
Amo13g3986 310 SUPERFAMILY DNA-binding domain 130 188 IPR016177 GO:0003677
Amo13g3986 310 SMART rav1_2 130 193 IPR001471 GO:0003700|GO:0006355
Amo13g3986 310 ProSiteProfiles AP2/ERF domain profile. 130 187 IPR001471 GO:0003700|GO:0006355
Amo13g3986 310 MobiDBLite consensus disorder prediction 203 217 - -
Amo13g3986 310 Pfam AP2 domain 130 179 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3986 Amo-Chr13 132433586 132436503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3986 121 192 AP2-EREBP Transcription Factor Family AT2G33710 75.000 2.52e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo13g3986 AP2 3.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3986 - - adu:107480341 452.981