Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3980 ATGGACTTCGACGAGTACGAATACTTGGAGAAGACAGTGGAGGACCACGACGACAAAGACTCCTCTAAGCTCAAGAAGAAGGACTCCACCGACAGAACAGATAGGTCTTACCGCAAGCGTGACGTCGACGACGATCTCGACGCTGCCGACGACAAGCGCACCAAGCGCTCCAGGCACGACGACGACGACACCACTGGCTCCAAGAGGGACCGTGACCGTGACCGCGAACGGTCCAGCCGTGACAGGGAGCGCCACCGCAGTGAGAGGGAGAAGGATAGGGATAGGGACGGGGAGAGGAGCAGCAGAGAAAAAGAGAAGGAGAGGGATCGGGATAAGGACAGAGAGAGGAGGGACAGAGACAGAGATAGAGATAGGGACAAGGAGAGGGAGAGGAGAGATAGGGAGAGAGAAAAGGAACGCGAGAGAAGGGAGAGGGAAAGGGAGAGGGAGAAGGAAAAGGAGAAAGAGAGAGAGGAGAGAGAGAGATCCAGGAGGAGCAGGAGTCGTTCCGAGAGAGACAGAGACAGAGAAAGAGAACCAGATTTCGAATCTCGCGATGGCCGGAGGTTTAGGGATAAAAAAGAGGCTGCGGAGCCTGAGGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTATCAGATGCCCTTAAAAGCAACAGAGAGAGATGTATATGAATTCTTCTCAAAAGCTGGCAAGGTTAGAGATGTTCGTCTGATCATGGATAGAAACTCAAGACGTTCTAAAGGAGTTGGGTACATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTTTCTGGCCAGCTTCTTCTTGGTCAACCTGTAATGGTGAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTACTGCTTCCACTGGAGCTGCTGGCGTAGCAGGACCATATGGTGCCATGGACAGAAAGCTGTATGTGGGCAATCTTCATTTCAACATGACTGAGAGTCAGCTGCGAGAGATTTTTGAGCCATTTGGGCCGGTGGAGGTTGTACAACTGCCTCTTGACTTGGAGACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTGCCCATCTTGAACATGCCAAGGCAGCACAGAATTTAAACGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTTTCATCTGTAACTGATCATGTTGGGAGCCAAGATACAACTGCAAAATCTGCAGATCTTGATGATGATGAAGGTGGATTGGCTTTAAATGCACAATCAAGAGCATTGCTTATGCAGAAGTTGGCAGACCGCCATGGCCTTCCTGGAAGCAATGGGGTGCCTGCTGTGAATGGGGCTGTTACTATTCAGCCAACCATGGGTTTGCCTATTGGTAATCCAGGTATAATACCTGCACCTGCTCTCCCAACTCAAATTTTGCCTGCTCCAGTGGCAGAACCTGTAGGGATCCCCAGTGAGTGTTTGCTGTTGAAGAATATGTTTGACCCTAGCACCGAGACTGAGCCAGATTTTGATATAGACATTAAAGAGGATGTAGAAGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTATGTTGACAAAAGAAGTGCGGGTTTTGTATATTTGCGGTTTGAAACGGTGGAAGCAGCAAGCGCTGCACAACGGGCAATGCACTTGAGATGGTTTGCACGCAGATTGATTTCAGCTGTGTTCATGCAACCTCAGGTCTACGAAGCTAAGTTTAAAGGAGAAGACTGA 1728 0.489 MDFDEYEYLEKTVEDHDDKDSSKLKKKDSTDRTDRSYRKRDVDDDLDAADDKRTKRSRHDDDDTTGSKRDRDRDRERSSRDRERHRSEREKDRDRDGERSSREKEKERDRDKDRERRDRDRDRDRDKERERRDREREKERERREREREREKEKEKEREERERSRRSRSRSERDRDREREPDFESRDGRRFRDKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSTASTGAAGVAGPYGAMDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFAHLEHAKAAQNLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADLDDDEGGLALNAQSRALLMQKLADRHGLPGSNGVPAVNGAVTIQPTMGLPIGNPGIIPAPALPTQILPAPVAEPVGIPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLRFETVEAASAAQRAMHLRWFARRLISAVFMQPQVYEAKFKGED* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3980 575 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 403 499 IPR029123 -
Amo13g3980 575 MobiDBLite consensus disorder prediction 1 208 - -
Amo13g3980 575 SUPERFAMILY RNA-binding domain, RBD 309 387 IPR035979 GO:0003676
Amo13g3980 575 Gene3D - 136 293 IPR012677 -
Amo13g3980 575 PANTHER CC1-LIKE SPLICING FACTOR 1 574 - -
Amo13g3980 575 CDD RRM1_RBM39_like 209 281 - -
Amo13g3980 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 504 556 IPR000504 GO:0003723
Amo13g3980 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 277 IPR000504 GO:0003723
Amo13g3980 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 382 IPR000504 GO:0003723
Amo13g3980 575 Gene3D - 476 574 IPR012677 -
Amo13g3980 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Amo13g3980 575 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 574 - -
Amo13g3980 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 388 IPR000504 GO:0003723
Amo13g3980 575 Gene3D - 306 402 IPR012677 -
Amo13g3980 575 SUPERFAMILY RNA-binding domain, RBD 476 563 IPR035979 GO:0003676
Amo13g3980 575 CDD RRM2_RBM23_RBM39 312 384 - -
Amo13g3980 575 SMART rrm1_1 311 384 IPR000504 GO:0003723
Amo13g3980 575 SMART rrm1_1 482 559 IPR000504 GO:0003723
Amo13g3980 575 SMART rrm1_1 209 281 IPR000504 GO:0003723
Amo13g3980 575 CDD RRM3_RBM39_like 480 562 - -
Amo13g3980 575 TIGRFAM SF-CC1: splicing factor, CC1-like family 101 571 IPR006509 GO:0003723|GO:0005634|GO:0006397
Amo13g3980 575 SUPERFAMILY RNA-binding domain, RBD 201 290 IPR035979 GO:0003676
Amo13g3980 575 Coils Coil 124 173 - -
Amo13g3980 575 MobiDBLite consensus disorder prediction 9 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3980 Amo-Chr13 132324652 132330598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3980 290 383 Eukaryotic Initiation Factors Gene Family AT4G34110 36.842 4.84e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3980 K13091 - gmx:100802446 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3980 13 132324652 132330598 Amo10g1935 10 69950405 69956227 PCT
Amo13g3980 13 132324652 132330598 Amo20g2456 20 114854959 114855903 PCT
Amo10g1935 10 69950405 69956227 Amo13g3980 13 132324652 132330598 PCT
Amo20g2456 20 114854959 114855903 Amo13g3980 13 132324652 132330598 PCT