Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3971 ATGGATTTGGATGATTTCCGATCCATACTGGACACCGCCCGCGTCGACGTTTGGGCTTTCTTTGACGCTGCAATCGACGTCGCTTCCGCCGATAACGCCGATGAATTGAAGCGCCGCCGGGACGGAATCGTCGAGCGCCTTTACGCCGCTACTGCCACGCCTCCCCGGTGTCTGAATTGCGAAGCAAATGCCGTCGAAGCACACAATCAGCAAAACAAATCGTCAGAGGACGAGGATATGGATCCTTTTGGAGGCTTATTCGATGACGAGCAGAAGAAGATTCTAGAAATTAAGCACCAACTTGAAGATCCTCACCAGTCGGAAGATTCGTTGGCGGAGTTGCTACAGAATCTGGCGGACATGGATATTACATTCCAGGCTTTAGAGGAAACTGACATTGGGAGGAACGTGAATCGGTTAAGGAAGCATTCCTCCAGTGAAGTTCGCAGATTGGTGAAGCTTCTTGTCAGGAAGTGGAAGGAAATTGTAGATGAATGGGTGAAGCTGAAGGCACCTGGAGAACCTGCTACTGCTAGTACTGTCATTGGTGATGATGAAGATTCGCCTCAGCAGAGGAATCAACMAAATGGGCATCATCAGATTCCTGGTTTTGCATGCTCGCCAAATTCAGAGAATGGCAATTTTGAGTCTTCCGAAACAGAACCAAAACCAAAACCAATTCCTCGCAAAGAAGCTCTGCCAAAACCAGCTCAAAAATCACCATCACCGTTACCATCGGTTCCCACTCCTCCTCCTCCTCAAAACAGACAAAAAGAGAGCAATTTTGACGCGGAGAGACTTGCTTCAGCAAGAAAACGACTTCAAGAGAACTACAAAGAGGCTGCAAATGCGAAAAAGCAAAGAACGATACAGGTGATGGACCTGCATGAGTTGCCAAAACCAAAAGCCAAGAATGTTTTCTTTGGAAAGAACAAAGGCGGCATGGGTTCTCAGGGAAGGAAATGGTGA 969 0.4778 MDLDDFRSILDTARVDVWAFFDAAIDVASADNADELKRRRDGIVERLYAATATPPRCLNCEANAVEAHNQQNKSSEDEDMDPFGGLFDDEQKKILEIKHQLEDPHQSEDSLAELLQNLADMDITFQALEETDIGRNVNRLRKHSSSEVRRLVKLLVRKWKEIVDEWVKLKAPGEPATASTVIGDDEDSPQQRNQXNGHHQIPGFACSPNSENGNFESSETEPKPKPIPRKEALPKPAQKSPSPLPSVPTPPPPQNRQKESNFDAERLASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKAKNVFFGKNKGGMGSQGRKW* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3971 322 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 92 172 IPR035441 -
Amo13g3971 322 MobiDBLite consensus disorder prediction 259 283 - -
Amo13g3971 322 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 88 175 IPR035441 -
Amo13g3971 322 MobiDBLite consensus disorder prediction 303 322 - -
Amo13g3971 322 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 322 IPR044790 -
Amo13g3971 322 Coils Coil 111 131 - -
Amo13g3971 322 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 322 - -
Amo13g3971 322 MobiDBLite consensus disorder prediction 183 219 - -
Amo13g3971 322 Pfam TFIIS helical bundle-like domain 114 163 IPR017923 -
Amo13g3971 322 SMART TFS2_5 94 165 IPR003617 GO:0005634
Amo13g3971 322 CDD TFIIS_I 91 164 - -
Amo13g3971 322 Coils Coil 264 291 - -
Amo13g3971 322 MobiDBLite consensus disorder prediction 238 255 - -
Amo13g3971 322 MobiDBLite consensus disorder prediction 176 285 - -
Amo13g3971 322 ProSiteProfiles TFIIS N-terminal domain profile. 89 166 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3971 Amo-Chr13 132144779 132147323 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Amo13g3971 Med26 5.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3971 - - aip:107630962 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3971 13 132144779 132147323 Amo20g2489 20 116102330 116106234 PCT
Amo20g2489 20 116102330 116106234 Amo13g3971 13 132144779 132147323 PCT