Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3965 ATGATGATGAAAGAAAGCAATAATAATAAGAAGGCGTACATGGCAGTGATCCTGATACAAGCCATATACGCAGTCATGTTCCTTCTCTCCAAGGCAGCATTCGACCATGGCATCAACACCTTCATCTTCGTCTTTTATAGGCAGGCCCTGGCCACTGTTTTCCTCGCTCCTTTTGCTTTCTTCTTCGAACGCAAAACTGCACCACCTCTCTCATTTCTCACCCTCTGCAACATCTTCTTCCTTTCTCTCTTCGGGATCACGGGGAGCTTGGACGTATATGGTATTGCACTTATATACACTTCACCCACTTTGGCTTCTGCTACCACTAACTGCCTTCCAGCCATTACCTTCTTCTTGGCACTCTTACTCAGGATTGAAATTCTGAAAGTAAAGACAGCGGCGGGTGTGGCTAAAATGGTAGGTGTGGTGGCATGCTTGTGTGGAGCCGCAACACTTGCTTTCTACAAAGGTCCTCATTTTCAGCTTTTAGGGCACCATCAAATACAACCATCTTCTTCTTCTCCTCCTTCTTCTTCTTCTTGGGTAAAGGGTTGCTTCCTCATGCTCCTCTCTAACTTCCTTTTTGGGATTTGGCTTGTGCTACAGGGTTTTGTGGTGAAAGGATACCCTTCAAAGCTGCGTCTTACGACTCTTCAGTGTTTGTGTAGCTCAATTCAGTCTTTCTGCATTGCATATGGCGTAGAGAGAAGCATTGAGCAATGGAAGCTGAGTTGGAATGTCTCACTCATTGCCGTACTATACTGTGGAATAATGGTGACGGGTGTGACGTATTACATACAAACATGGGTGATAGAGAAGAAAGGGCCAGTGTTTCTGGCCATGTCAACGCCACTCGCTTTCATAATCACCGTCGTCTCCTCCGCAATTCTGCTGCACCAGATCGTAACTTTGGGAAGCATTTTAGGTGGGTTACTATTGGTTATAGGATTGTATAGCGTTCTGTGGGGTAAGACAAGAGAGGAAATGCCCAAAGTCACAGACTTGGAGGTTGGATCGGAGCACCACCCCCCACCGCCGCAATAA 1044 0.4636 MMMKESNNNKKAYMAVILIQAIYAVMFLLSKAAFDHGINTFIFVFYRQALATVFLAPFAFFFERKTAPPLSFLTLCNIFFLSLFGITGSLDVYGIALIYTSPTLASATTNCLPAITFFLALLLRIEILKVKTAAGVAKMVGVVACLCGAATLAFYKGPHFQLLGHHQIQPSSSSPPSSSSWVKGCFLMLLSNFLFGIWLVLQGFVVKGYPSKLRLTTLQCLCSSIQSFCIAYGVERSIEQWKLSWNVSLIAVLYCGIMVTGVTYYIQTWVIEKKGPVFLAMSTPLAFIITVVSSAILLHQIVTLGSILGGLLLVIGLYSVLWGKTREEMPKVTDLEVGSEHHPPPPQ* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3965 347 Pfam EamA-like transporter family 183 321 IPR000620 GO:0016020|GO:0016021
Amo13g3965 347 Pfam EamA-like transporter family 11 143 IPR000620 GO:0016020|GO:0016021
Amo13g3965 347 SUPERFAMILY Multidrug resistance efflux transporter EmrE 243 326 - -
Amo13g3965 347 PANTHER WAT1-RELATED PROTEIN 12 329 IPR030184 GO:0016021|GO:0022857
Amo13g3965 347 PANTHER WAT1-RELATED PROTEIN 12 329 - -
Amo13g3965 347 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3965 Amo-Chr13 132031517 132034132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3965 8 255 Nodulin-like Gene Family AT5G64700 60.311 3.81e-95 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3965 - - ccaj:109799350 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3965 13 132031517 132034132 Amo10g1965 10 71217347 71221403 PCT
Amo10g1965 10 71217347 71221403 Amo13g3965 13 132031517 132034132 PCT