Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3950 ATGACAAGGAAGAAGATAGAGATAAAGAAGATCGACAACATAAGTTCAAGGCAAGTTACCTTCTCAAAGAGGAGGAAAGGGCTCTTCAAGAAGGCTCAGGAGCTTAACACTCTCTGTGATGCTGAAATTGCTCTCATTGTCTTCTCCACAACCAGCAAGCTTTTTCAATATGCTACTTCAAGTATGCAACAATTAATAGAAAGACGTAATCAGCATTCACCAATTCAAAAATCGGATCCTCCATCCGCTGTGCTGCAGGTTGAGAGTGGTGCTGCCTCCAACTATGATATGCTGCGCAAGAAAGAAGAACAAAAGGCTCGTGAACTCAGGCAGTTAAATGGTGAAGATCTTCAAGGATTGACACTAAACGAACTCAACAAATTAGAAGAGCAACTTATAAAAGGTCTCTCTAATGCTTCAAAAGTAAAGGATGAATTATTTACACAAGAGATCTACACCCTTAAGAGAAAGGGAGCAGTACTGACCGAAGAGAACCATAAATTGAAACAGATATCATCAAGCTTTGCAAATGAGCAAAGGAGTTCATTTAAATCCATTGTCTGCAATTCATCTTATCTTCCTGAAGAAGATCATGGTAGAGACACAAATCTAAAGCTGGGGTTACCTTAA 630 0.3937 MTRKKIEIKKIDNISSRQVTFSKRRKGLFKKAQELNTLCDAEIALIVFSTTSKLFQYATSSMQQLIERRNQHSPIQKSDPPSAVLQVESGAASNYDMLRKKEEQKARELRQLNGEDLQGLTLNELNKLEEQLIKGLSNASKVKDELFTQEIYTLKRKGAVLTEENHKLKQISSSFANEQRSSFKSIVCNSSYLPEEDHGRDTNLKLGLP* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3950 209 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Amo13g3950 209 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Amo13g3950 209 ProSiteProfiles K-box domain profile. 88 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo13g3950 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo13g3950 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo13g3950 209 Coils Coil 95 115 - -
Amo13g3950 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 182 - -
Amo13g3950 209 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 182 - -
Amo13g3950 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo13g3950 209 Pfam K-box region 93 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo13g3950 209 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Amo13g3950 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo13g3950 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo13g3950 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo13g3950 209 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3950 Amo-Chr13 131761831 131766995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3950 1 209 MADS-box Gene Family AT4G24540 46.606 3.98e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo13g3950 K-box 6.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3950 - - aip:107631071 402.134