Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3939 ATGGCTTCTTCTATTTCTTCTTCTATCAATATCTCCTCGTATTCCTCCACACCACCTCTTTTCCACCCAAGTGCTTCTGCATCCCAACGCTTCAAATTGTTCAATGGATTGCGCCGTACAAATGGACATGCGTTAGATTTCGTGTTTCTCCGACTCTCCTCTAAATTCCCCTCTATTCACTCTGCTATTTCTAGAATTGAAGCTGCAGGGGGAGAACTGCATTCTAATAGGCTAGGCTCTGATGCTGCTGCCAAAAAGGTTGAATCAGTTACGAGAATCAATCGGTTTTCTGATGAAGATGATGAATTTGATCTTGACACTCCCACGCAAGGTTTTGCTTCCATCCCGGAGGCCATTCAAGACATTCGCAACGGAAAGATGGTAGTTGTTGTAGATGACGAAGACAGAGAAAATGAAGGAGATTTAATCATGGCAGCAGAGTTAGTAACACCTGAGGCCATGGCTTTTATTGTTAAGCATGGAACCGGCATAGTCTGCATTAGCATGAAAGAGGAAGATCTGGAAAGACTGGATCTTCCACTCATGGTAAACAGCAAGGACAATGATGAAAAACTGCGCACAGCATTCACTGTGACAGTGGATGCCAAACATGGTACCACAACAGGGGTGTCAGCTCGTGATCGAGCAACAACAGTCTTGGCCCTTGCATCTAGCGATTCTAAACCAAGTGATTTCAATCGCCCAGGCCATATTTTTCCACTAAAATACAGGGAAGGTGGTGTGTTGAAGAGAGCAGGACACACAGAAGCTTCAGTTGATCTTGCCATGCTTGCTGGTTTGAATCCAGTAGCAGTCCTATGTGAAATTGTTGATGAGGATGGTTCCATGGCACGATTGCCTAAGCTTCGCCAGTTTGCAGAACGCACAAATTTGAAAATTGTATCTATTGCTGACTTGATTAGATACAGAAGGAAGAGAGATAAATTAGTAGAACATGCTGGTGCTGCTGTTATACCAACAATGTGGGGACCATTTAATGCTTGCTGTTATAGATCACTTATAGATGGCGTGGAGCATATTGCAATGGTTAAGGGTGACATTGGAGATGGACAAGATGTTCTCGTGAGAGTACATTCAGAGTGTCTTACGGGAGATATATTTGGATCTGCAAGATGTGACTGTGGGAGCCAGCTTGCTATTGCAATGCAGCAGATTGAGGCTGCTGGTAGAGGTGTATTGGTGTATCTTCGTGGACACGAGGGAAGGGGGATTGGATTGGGTCATAAGCTTCGCGCTTATAACCTGCAGGATGATGGACGGGACACCGTAGAAGCCAACGAAGAGTTGGGATTGCCTGTTGACTCAAGAGAGTATGGAATTGGTGCACAGATACTGAGGGACTTGGGTGTTCGTTCAATGAAGCTGATGACAAACAATCCAGCAAAATATGTTGGGCTCAAAGGTTATGGTTTGACAATTTCTGGAAGGATTCCTTTAGTAGCACTTATTACAAAGGAAAACAGGAGATATTTGGAGACAAAGCGTGTAAAAATGGGTCATGTTTATGGACTAAAATCCAACAGCGAACTGAATCCAGACAGGGGCAATGGTAAACCTGGTGTTGATGATTCTAAGGGTGCTACTAGCCAATAG 1614 0.4418 MASSISSSINISSYSSTPPLFHPSASASQRFKLFNGLRRTNGHALDFVFLRLSSKFPSIHSAISRIEAAGGELHSNRLGSDAAAKKVESVTRINRFSDEDDEFDLDTPTQGFASIPEAIQDIRNGKMVVVVDDEDRENEGDLIMAAELVTPEAMAFIVKHGTGIVCISMKEEDLERLDLPLMVNSKDNDEKLRTAFTVTVDAKHGTTTGVSARDRATTVLALASSDSKPSDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAMLAGLNPVAVLCEIVDEDGSMARLPKLRQFAERTNLKIVSIADLIRYRRKRDKLVEHAGAAVIPTMWGPFNACCYRSLIDGVEHIAMVKGDIGDGQDVLVRVHSECLTGDIFGSARCDCGSQLAIAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQILRDLGVRSMKLMTNNPAKYVGLKGYGLTISGRIPLVALITKENRRYLETKRVKMGHVYGLKSNSELNPDRGNGKPGVDDSKGATSQ* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3939 537 SUPERFAMILY RibA-like 315 486 IPR036144 -
Amo13g3939 537 Gene3D DHBP synthase 101 316 - -
Amo13g3939 537 CDD GTP_cyclohydro2 316 507 IPR000926 GO:0003935|GO:0009231
Amo13g3939 537 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 111 507 IPR016299 GO:0009231
Amo13g3939 537 TIGRFAM ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 113 310 IPR000422 GO:0008686|GO:0009231
Amo13g3939 537 PANTHER 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE 90 534 - -
Amo13g3939 537 SUPERFAMILY YrdC/RibB 110 313 IPR017945 -
Amo13g3939 537 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 117 309 IPR000422 GO:0008686|GO:0009231
Amo13g3939 537 Gene3D GTP cyclohydrolase II 317 488 IPR036144 -
Amo13g3939 537 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 110 314 IPR000422 GO:0008686|GO:0009231
Amo13g3939 537 TIGRFAM ribA: GTP cyclohydrolase II 322 508 IPR000926 GO:0003935|GO:0009231
Amo13g3939 537 PANTHER GTP CYCLOHYDROLASE II-RELATED 90 534 - -
Amo13g3939 537 Pfam GTP cyclohydrolase II 322 485 IPR032677 -
Amo13g3939 537 MobiDBLite consensus disorder prediction 511 537 - -
Amo13g3939 537 Hamap GTP cyclohydrolase-2 [ribA]. 315 511 IPR000926 GO:0003935|GO:0009231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3939 Amo-Chr13 131627810 131632035 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3939 K14652 - gmx:100791686 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3939 13 131627810 131632035 Amo10g0294 10 2971907 2976027 PCT
Amo13g3939 13 131627810 131632035 Amo20g0216 20 2965030 2967721 PCT
Amo20g0216 20 2965030 2967721 Amo13g3939 13 131627810 131632035 PCT
Amo10g0294 10 2971907 2976027 Amo13g3939 13 131627810 131632035 PCT