Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3938 ATGGTTGGTGATCCACATTCAATGCACAAACATTCTGCTGTGTTCTATTTCCTCCTAAGCTCTGTCTACATCAGAATTTTTCTGTTTACATTTGATCTATTTCATCAACTCTATTTACCTCCTTTGTTTCTTTTTTTTTCTTCTGCAATGCCTCCTCCATTTGATATGATTTCTAAGATGCATCTTCCTAGAGAGGCTTGGAGGCTGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCCTCTTTTGGGAATCATGATGTTCCTAACTCAATGGATATGATTCTCCTTGATGAGCATTGTGGAAAAATTCAAGCTACAGTTAAGAAACCACTTCTTAATAGGTTTAGGGATCATATAATTGAAGGTCAAGTTTATAGAATGACATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATAAATTCAAATTAGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATAAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGTTGAACATGACCCAAGATTATGATTTTTTAGTTGATGTCATTGGCCTTTTAACTTCAGTGGAAGAAGAGAAAGAATATGCAAAAGAGGGAAAAATTGTGAAAATGATTGTGCTTGAATTAAGTTCAAAAGATCTTACAGTGCGATGTGCATTGTTTAGGGACTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGTTATGTGGAGCAGCCTGTTGTAGTGATTCAACTTGCTAAAGTCAAGTTCTTTAGGGGCCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTGATCTTCCTGAAGTTGTTGAATTCAGGCAGAGTATGGTTGAGCAAGGTGTCAATGGTACCCAACCACTGTTTATTGCAAATGAGGGTAAAGTTGTCTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTGAAGATCTTCAAGATAACAATGAGGTATTGTTGAGGATTGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGCACGTAACTAATATGACTCCAAGATTTAAAATTAAAATAACAGTTGAAGATCATAGTGGGGAGCGTATTTTCCTTCTCTTTGATCGTGAGGCATCTTATTTGCTTAAGAAATCATGTGCTGACTTGTTTACCGAGGTTCAAAGAGATGCAAGTCTTGTATGTGGGGATACTTATCCTCTCATATTCCAAGGGCTCATTGAAAAGAAGTTACTGCTGAAGTTTGATACCAAAGTTAGGAGAATATGTGATGATCCCACCATTATTGCCATGTTTGAGCTTCTCGATTATGATGCTGATGATGAGTCTACTCCAAAAAAGGAGCCTGATTTACACAAATCTGTTCCCTGTGAAAAAGGGGATATTGGTATTAAGAAGGAGTCATCAAAGACTTTTATCAAAAGTGAGAAAGTTGCTAGTGAGTCTTCTGGGATTTTATCTAAATCCCCACCTGCTATTTTCCGAGGGACTGAGTTTGCTTCCTTAATTAATGGTGAACATGGAAAACATGAGAAAACACCCAGCAATGATACTGTTAGTGATGATCTTTCTGCTGAACTGGATATATTGCGTAGCTCACCAGAAAAAGAAACCCAGGAGGTGTTGTCCCACGTTATTGATGCACCTTCCCAATATGGAGAGAAGCTTATTCATGAAAATGATGTTGTCACCTCCAAGGGCAAGAGGAATCTGAATCCCCAATTTGAAGAGGCGGCTGCTGATGCAGGCGTGGGTTCAAGATTGCCAAGGTTAATGAAGTTTGATTTAAGGTGTGGAATTGAGCTGCTGTGTCTAGGTGTAGAAAGGCTTGTGATTCCAAATACATTGAAATGTAATCATGTTAGCTGGATGGAACTTAACAATGTGGATGTCTTTTGGGCAATGAATTAG 1932 0.3804 MVGDPHSMHKHSAVFYFLLSSVYIRIFLFTFDLFHQLYLPPLFLFFSSAMPPPFDMISKMHLPREAWRLKVRVLRLWVVPSFGNHDVPNSMDMILLDEHCGKIQATVKKPLLNRFRDHIIEGQVYRMTYFTVVSNHGSYRATSHKFKLVFLHRTTVVAVDKDVIPKTCFNMFPFSELLNMTQDYDFLVDVIGLLTSVEEEKEYAKEGKIVKMIVLELSSKDLTVRCALFRDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGLQNVMYATQMLFNPDLPEVVEFRQSMVEQGVNGTQPLFIANEGKVVSLEDDFMRLTRKCTIEDLQDNNEVLLRIEVGGILLVCVERHVTNMTPRFKIKITVEDHSGERIFLLFDREASYLLKKSCADLFTEVQRDASLVCGDTYPLIFQGLIEKKLLLKFDTKVRRICDDPTIIAMFELLDYDADDESTPKKEPDLHKSVPCEKGDIGIKKESSKTFIKSEKVASESSGILSKSPPAIFRGTEFASLINGEHGKHEKTPSNDTVSDDLSAELDILRSSPEKETQEVLSHVIDAPSQYGEKLIHENDVVTSKGKRNLNPQFEEAAADAGVGSRLPRLMKFDLRCGIELLCLGVERLVIPNTLKCNHVSWMELNNVDVFWAMN* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3938 643 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 69 391 - -
Amo13g3938 643 Gene3D - 320 449 IPR012340 -
Amo13g3938 643 SUPERFAMILY Nucleic acid-binding proteins 169 288 IPR012340 -
Amo13g3938 643 Gene3D - 163 296 IPR012340 -
Amo13g3938 643 PANTHER REPLICATION FACTOR A 1, RFA1 69 391 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo13g3938 643 SUPERFAMILY Nucleic acid-binding proteins 348 428 IPR012340 -
Amo13g3938 643 CDD RPA1_DBD_B_like 189 288 - -
Amo13g3938 643 CDD RPA1_DBD_A_like 68 156 - -
Amo13g3938 643 Pfam Domain of unknown function DUF223 93 183 IPR003871 -
Amo13g3938 643 Gene3D - 54 161 IPR012340 -
Amo13g3938 643 SUPERFAMILY Nucleic acid-binding proteins 52 159 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3938 Amo-Chr13 131609560 131613208 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3938 35 294 Core DNA Replication Machinery Family AT5G45400 21.898 1.37e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3938 - - adu:107471135 775.007