Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3931 ATGACCTCTGCTAATGACATCACTGATAATGAAGCTGATGGGAAGCAACAGTCTGAATCAGAGATGCAGTCTTCCTCTGCAAATGGAACTTCTGATCCAGACACGGGTTCCCAGAATGTTCAGTTTGAAAAACCTGCACAGCTTGGAGATGTTCTGGCTATGGCACCACCTGGTTACCCATATCCAGATCCTTACTATAGAAGCATCTTTGCTCCCTATGATACACAAGCTTATGCCCCACAGCCTTATGGATATGGTGGACAACCGATGGTCCATTTTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTGCCAAGTGATGCTTTTGAGGAGCCTGTGTTTGTAAATGCGAAACAATATCATGGTATATTAAGACGAAGGCAATCCCGTGCCAAAGCTGAATCAGAGCATAAAGCTATTAGGAATAGGAAGCCATACTTGCATGAATCTCGGCATTTGCATGCGCTGAAAAGAGCAAGAGGATGTGGAGGCCGATTCCTAAATGCAAAGGAAAATGAGAACGGACATAATGATGCGGCATCAACTGACAAATCACAGTGCAATATCAACCCCAATTCTGATAAAAGTGATATCACTTCATCAGATAGGACAGTCTAA 621 0.4364 MTSANDITDNEADGKQQSESEMQSSSANGTSDPDTGSQNVQFEKPAQLGDVLAMAPPGYPYPDPYYRSIFAPYDTQAYAPQPYGYGGQPMVHFQLMGIQQAGVPLPSDAFEEPVFVNAKQYHGILRRRQSRAKAESEHKAIRNRKPYLHESRHLHALKRARGCGGRFLNAKENENGHNDAASTDKSQCNINPNSDKSDITSSDRTV* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3931 206 MobiDBLite consensus disorder prediction 168 206 - -
Amo13g3931 206 PRINTS CCAAT-binding transcription factor subunit B signature 113 135 IPR001289 GO:0003700|GO:0006355
Amo13g3931 206 PRINTS CCAAT-binding transcription factor subunit B signature 144 167 IPR001289 GO:0003700|GO:0006355
Amo13g3931 206 Gene3D - 110 171 - -
Amo13g3931 206 SMART cbf3 109 170 IPR001289 GO:0003700|GO:0006355
Amo13g3931 206 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 112 167 IPR001289 GO:0003700|GO:0006355
Amo13g3931 206 MobiDBLite consensus disorder prediction 180 200 - -
Amo13g3931 206 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 2 192 - -
Amo13g3931 206 ProSiteProfiles NF-YA/HAP2 family profile. 110 170 IPR001289 GO:0003700|GO:0006355
Amo13g3931 206 ProSitePatterns NF-YA/HAP2 subunit signature. 115 135 IPR018362 GO:0003677|GO:0016602
Amo13g3931 206 MobiDBLite consensus disorder prediction 1 44 - -
Amo13g3931 206 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 192 IPR001289 GO:0003700|GO:0006355
Amo13g3931 206 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3931 Amo-Chr13 131410178 131414443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3931 49 205 CCAAT-HAP2 Transcription Factor Family AT1G30500 62.420 4.88e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Amo13g3931 CBFB_NFYA 8.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3931 K08064 - gmx:100499754 302.367