Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3909 ATGGAACTTAGTAGTTCAGTTTCATGGCTACTTGGTTTACTTCTTTTGGCTATGGTGGAAATGTCTTCTTCTGCTCTTTCTCCTTCCGGGATAAATTATGAAGTTGTAGCTCTGATGGCCATTAAGAATGGCTTGAATGATCCCCACAATGTCCTTGAGAATTGGGATATCAATTCTGTTGATCCTTGTAGCTGGAGGATGATTACTTGTTCTCTAGATGGCTCCGTTTCTGCATTGGGATTGCCTAGTCAGAACTTGTCTGGTACACTATCTCCAGGGATTCAAAACCTTACTAACTTGCAATCAGTGTTGCTTCAGAACAATGCTATTTCTGGTCAGATTCCTGCTGCAATTGGAAAGCTAAAAAAGCTTGAGACACTTGACCTTTCCAATAATGCATTTAGTGGTGAGATACCAAGTTCTTTGGGAGGCCTCACAAGCCTGAACTACCTGCGGTTGAACAATAACAGCCTTACCGGAGCATGCCCTCAGTCTCTTAGTAACATTGAAGGTCTAACACTTGTGGACCTCTCTTATAACAATTTGAGTGGTTCTTTGCCAAGAGTAACAGCAAGAACATTCAAGATTGAGGGTAACCCATTAATATGTGGTCCAAAAGCAAATAACTGTTCTAATGTGTTGCCAGAACCACTTTCCTTCCCTCCAGATGCTCTAACAGCTCAATCAGACTCTAGCAACAAAAGCCATCGTGTTGCAGTTGCTTTTGGTGCGAGTTTCGGTTCTGCTTTTATCATTGTAATTATTGTTGTGTTTCTCGTTTGGTGGCGATACAGACAGAATCAGCAGATATTCTTTGATGTTAGCGAGCAATACGACCCTGAGGTGCGCCTTGGTCATTTGAAGAGGTATTCGTTCAAAGAGCTTAGAGCCGCAACAGACCATTTCAGTTCAAAGAATATTTTAGGAAAGGGTGGCTTTGGAATAGTCTACAAAGGATGCTTGAATGATGGAACAATTGTGGCAGTTAAAAGGTTGAAGGATTACAATGCTGCTGGTGGTGAGATCCAATTTCAGACAGAGGTTGAGACAATAAGTTTGGCTGTGCACCGGAATCTTCTGCGTCTCAGTGGATTTTGCAGTACTCAGAATGAAAGGCTCCTTGTTTATCCTTATATGTCCAATGGCAGTGTAGCCTCTAAATTAAAAGATCATGTTCATGGTCGGCCAGCCTTAGATTGGGTGAGGAGGAAGAGAATAGCGATAGGTACAGCGAGGGGGTTGGTTTATTTGCATGAACAATGTGATCCGAAAATTATTCATCGTGATGTCAAAGCAGCCAATATATTGCTAGATGAAGATTTCGAAGCAGTTGTTGGCGATTTTGGTTTGGCTAAGCTTCTGGATCACAGAGATACTCATGTGACAACTGCTGTCCGCGGAACTGTCGGCCATATTGCTCCAGAGTACTTATCAACAGGTCAGTCATCAGAGAAGACTGATGTGTTTGGGTTTGGAATCTTGCTTCTTGAGCTAATCACAGGCCATAAGGCTGTAGATTTCGGGCGAGCAGCAAACCAGAAGGGCGTCATGCTTGATTGGGTTAAGAAGCTCCACCAAGATGGAAGATTAAGCCAAATGGTGGACAAAGATCTAAGAGGAAGTTTTGATTTGCTTGAGTTGGAAGAAATGGTGCAGGTAGCACTATTATGCACACAATTCAAGCCTTCGCATCGCCCGAAGATGTCAGAAGTATTGAAGATGTTGGAAGGTGATGGATTAGCTGAGAGATGGGAGGCCTCACAGTCACACAAGATTGAAACACCAAGGCTCCGATCTAGTAATAGTGAAAATAACCCTCAAAGATATTCAGATTTCATAGAAGAATCTTCACTCATATTAGAAGCTATGGAGCTTTCTGGCCCAAGATGA 1890 0.4265 MELSSSVSWLLGLLLLAMVEMSSSALSPSGINYEVVALMAIKNGLNDPHNVLENWDINSVDPCSWRMITCSLDGSVSALGLPSQNLSGTLSPGIQNLTNLQSVLLQNNAISGQIPAAIGKLKKLETLDLSNNAFSGEIPSSLGGLTSLNYLRLNNNSLTGACPQSLSNIEGLTLVDLSYNNLSGSLPRVTARTFKIEGNPLICGPKANNCSNVLPEPLSFPPDALTAQSDSSNKSHRVAVAFGASFGSAFIIVIIVVFLVWWRYRQNQQIFFDVSEQYDPEVRLGHLKRYSFKELRAATDHFSSKNILGKGGFGIVYKGCLNDGTIVAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLSGFCSTQNERLLVYPYMSNGSVASKLKDHVHGRPALDWVRRKRIAIGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDTHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKAVDFGRAANQKGVMLDWVKKLHQDGRLSQMVDKDLRGSFDLLELEEMVQVALLCTQFKPSHRPKMSEVLKMLEGDGLAERWEASQSHKIETPRLRSSNSENNPQRYSDFIEESSLILEAMELSGPR* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3909 629 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Amo13g3909 629 SUPERFAMILY L domain-like 32 199 - -
Amo13g3909 629 MobiDBLite consensus disorder prediction 593 609 - -
Amo13g3909 629 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Amo13g3909 629 SUPERFAMILY Protein kinase-like (PK-like) 279 576 IPR011009 -
Amo13g3909 629 ProSiteProfiles Protein kinase domain profile. 302 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3909 629 MobiDBLite consensus disorder prediction 586 609 - -
Amo13g3909 629 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Amo13g3909 629 Gene3D Transferase(Phosphotransferase) domain 1 379 595 - -
Amo13g3909 629 PANTHER PROTEIN NSP-INTERACTING KINASE 3 6 629 - -
Amo13g3909 629 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 629 - -
Amo13g3909 629 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
Amo13g3909 629 SMART serkin_6 302 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3909 629 Pfam Protein kinase domain 303 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3909 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Amo13g3909 629 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3909 Amo-Chr13 130875665 130879735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3909 67 629 Receptor kinase-like Gene Family AT1G60800 74.824 0.0 821
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Amo13g3909 Pkinase 5.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3909 - - gmx:100806943 1086.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3909 13 130875665 130879735 Amo13g3909 13 130875665 130879735 ECH