Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3900 ATGTCATCAAGTAGAAGACTAGTGAGGCATGTGTTTGATGTTCCTGAAGAGATATGTTACGTGCAATGTGGATTGTGTTCATCCATTTTAGTGGTGAGTGTGCCATGCACCAGCATGTCAATGGCGGTTCTCAGTGTCAGATGCGGCCACTGCACAACCGTTCTCTCTGTCAACATGTTCAAACCTTCCTTTCTTCCTTCTCTAGTAACCCCTTCCAATCAGCTAAATATTGAGGATGGCAACAAGATTAGCACTTTGAACACTCATAATAATTATAATGATTGTGAGGAAGCCAATAATGATGTAACTACTCCATTTACAACTGATTCTGCTCCCAATAAACCACCAGAAAAGAAACAGCGAACACCGTCGGCTTATAACTGTTTCATCAAAGAAGAGATTAAGAGGCTTAAAGCTGAAAACCCTGAAATGGCCCACAAGGAAGCTTTCAGTACTGCTGCAAAAAATTGGGCCAATTTCCCCCCATCTGAGTATAGAAGAGGAGATGATGAAATTGACCAAGACCGCTCTACCCACACACCCCAACTTGCTAATAATAATAAGGTGAATATTGAAGAAGGTGAAGATCGACGTGGAAGAAAGAATCTAGAGAATTCTATGATAAATGCACCGTTCAAGTGA 642 0.4128 MSSSRRLVRHVFDVPEEICYVQCGLCSSILVVSVPCTSMSMAVLSVRCGHCTTVLSVNMFKPSFLPSLVTPSNQLNIEDGNKISTLNTHNNYNDCEEANNDVTTPFTTDSAPNKPPEKKQRTPSAYNCFIKEEIKRLKAENPEMAHKEAFSTAAKNWANFPPSEYRRGDDEIDQDRSTHTPQLANNNKVNIEEGEDRRGRKNLENSMINAPFK* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3900 213 Gene3D High mobility group box domain 104 188 IPR036910 -
Amo13g3900 213 PANTHER AXIAL REGULATOR YABBY 4 1 175 - -
Amo13g3900 213 SUPERFAMILY HMG-box 109 181 IPR036910 -
Amo13g3900 213 MobiDBLite consensus disorder prediction 160 213 - -
Amo13g3900 213 CDD HMGB-UBF_HMG-box 121 164 - -
Amo13g3900 213 Pfam YABBY protein 15 162 IPR006780 GO:0007275
Amo13g3900 213 MobiDBLite consensus disorder prediction 97 123 - -
Amo13g3900 213 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 119 187 IPR009071 -
Amo13g3900 213 PANTHER PROTEIN YABBY 6-RELATED 1 175 IPR006780 GO:0007275
Amo13g3900 213 MobiDBLite consensus disorder prediction 97 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3900 Amo-Chr13 130772109 130773957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3900 8 168 C2C2-YABBY Transcription Factor Family AT1G23420 50.286 2.56e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Amo13g3900 YABBY 3.5e-53 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3900 K25796 - gmx:100804172 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3900 13 130772109 130773957 Amo13g3900 13 130772109 130773957 ECH