Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3895 ATGGCATCAAGATCATATGCTAATCTCTTTGACTTAGCTTCTGGAGGAGATTTGCTGGATATTCCTCGCACCCCAAGAGTTCTTCCAAGGATTATGACTGTTCCTGGAATTATCTCCGACCTTGATAGTTGTGGTGCTAATGATGGGGATTCAGATGTAAGCTCCTCTGGTTGCCGGGAGCGGAAGATCATTGTCGCAAACATGCTGCCATTGCATGCTAAAAGAGATGCAGAAAATTCTAAGTGGTGCTTCAGTTGGGATGAGGATTCAATTTTACTACAATTGAAAGATGGTTTTTCTTCTGATTCGGAGGTAATTTATGTGGGTTCACTTAAGGTTGATATAGATGCCAGTGAGCAGGAAGAAGTTGCCCAGAGATTACTGGATGACTTCAATTGTGTACCTACCTTTCTATCCCATGATCTCCAGAAAAAGTTCTATCTTGGGTTTTGCAAGCAGCAGCTTTGGCCTCTCTTTCATTATATGCTACCAGTGTGCCCCGATCATGGTGATCGCTTTGACCGCATACTATGGCAGGCTTATGTTTGTGCAAACAAAATATTTGCCGACAAGGTTATGGAAATAATCAATCCTGATGATGATTTTGTCTGGGTTCATGATTATCACCTGATGGTTTTGCCTACTTTCTTGAGGAAGAGATATAATCGAGTTAAACTTGGATTCTTCTTGCACAGTCCTTTTCCTTCATCTGAAATTTATCGAACTTTACCTGTAAGGGATGAAATTTTGAGGGGACTTCTGAATGCTGATTTAATTGGTTTTCATACATTTGATTATGCACGCCACTTCCTTTCTTGCTGCAGCAGAATGCTAGGTCTGGACTATGAATCTAAGCGAGGACATATAGGACTTGATTACTTTGGCCGTACTATATTTATCAAAATTTTGCCGGTTGGCATTCACATGGGTAGGCTTGAATCTGTATTAAATCTTCCTTCTACATCTGCTAAACTAAAAGAGATTCAGGAAGAGTTTGAGGGTAAGAAGGTGATTGTTGGTGTTGATGATATGGATATTTTTAAAGGCATCAGTTTGAAACTTCTAGCTGTGGAGCATCTGCTGCAGGAGAATCCAGATATGCAGGGCAAAGTTGTCCTTGTTCAAATTGTAAATCCTGCAAGGGGTTTAGGGAAGGATGTTCAGGAAGCAAAGAAGGAAACATATTTAATTGCCCAGAGGATTAATGATACCTATGGTTCAGAGGAATATCAGCCTGTCAAACTCATTGACCGCCATGTTCCTCGATTTGAGAAGAGTGCTTATTATGCTGTAGCTGAATGTTGCATTGTAAATGCAGTAAGGGATGGCATGAACCTAGTCCCATACAAATATCTTGTCTGCAGGCAACAAACTGCTAAACTAGATGAAGCATTGGGTAGGAAAGTTGATTCTCCTCGAACAAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCACCTTCTCTTAGTGGGGCTATCAGGGTCAATCCCTGGGACATTGATGCTGTTGCTGACGCTCTGAGCTTGGCCCTTACAATGAATGATTCTGAGAAGCAATTGCGCCATGAGAAACACTATCGGTATGTCAGTTCTCATGATGTAGCATATTGGGCACGCAGCTTTATGCAGGATTTGGAGAGAGCCTGCAAAGATCATTACACCAAAAGGTGCTGGGGAATTGGCTTGGGTCTAGGGTTTAGAGTTGTTTCTCTTTCTCCTGGATTTAGGAAGTTGTCTATTGATCATGTTGTTTCAGCTTACAAGCGAACCAATAGAAGGGCCATCTTTCTTGATTATGATGGTACTGTTGTACCGCACTCTTCTATAAATAAAGTCCCCAGCCCGGAAGTCATATCTGTGCTAAACGCTCTGTCTAGTGATCCCAAGAACATTGTTTTCATTGTTAGTGGGAGGGGAAGAGATTCTCTGAGTGATTGGTTCAGTTCATGCCAATTGCTGGGACTTGCTGCTGAGCATGGTTACTTTTTAAGGTGGAATAGAGATTCTGAATGGGAATGCAGTCACTTGTCTGCAGACCTTGACTGGAAAAACATAGCAGAACCTGTCATGCAGTTGTATACAGAGGCAACTGATGGTTCCAGCATTGAAATTAAGGAAAGTGCTTTGGTGTGGCATCATCAAGATGCAGACCCGGATTTTGGTTCCTGCCAAGCCAAGGAATTGTTGGATCACTTGGAAAGTGTACTTGCAAATGAACCAGCAGTTGTTACGAGAGGCCAGCATATTGTTGAAGTTAAGCCACAGGGAATAAGCAAAGGTTTGGTAGCCGAAAAGGTTATATCAACCATGTTTAATGGTGGTAATCCACCGGATTTTGTTATGTGCATTGGCGATGATAGGTCTGATGAAGACATGTTTGAGACCATTTTAAGGTCAGTATCCTGCCCGTCATTACCGGCGACTCCAGAGATTTTTGCCTGCACTGTAGGTAGGAAGCCGAGCAAGGCGAAGTATTTTCTTGACGACACTTTGGATGTAGTGAAGTTACTTCAGGGTCTTGCTTCTTCATCCAATCCAAAACCCAGGCATCTTGCGCAATTCCAAGTTTCTTTCGAGAGCACAATTTGA 2589 0.4233 MASRSYANLFDLASGGDLLDIPRTPRVLPRIMTVPGIISDLDSCGANDGDSDVSSSGCRERKIIVANMLPLHAKRDAENSKWCFSWDEDSILLQLKDGFSSDSEVIYVGSLKVDIDASEQEEVAQRLLDDFNCVPTFLSHDLQKKFYLGFCKQQLWPLFHYMLPVCPDHGDRFDRILWQAYVCANKIFADKVMEIINPDDDFVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNADLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLESVLNLPSTSAKLKEIQEEFEGKKVIVGVDDMDIFKGISLKLLAVEHLLQENPDMQGKVVLVQIVNPARGLGKDVQEAKKETYLIAQRINDTYGSEEYQPVKLIDRHVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYLVCRQQTAKLDEALGRKVDSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALSLALTMNDSEKQLRHEKHYRYVSSHDVAYWARSFMQDLERACKDHYTKRCWGIGLGLGFRVVSLSPGFRKLSIDHVVSAYKRTNRRAIFLDYDGTVVPHSSINKVPSPEVISVLNALSSDPKNIVFIVSGRGRDSLSDWFSSCQLLGLAAEHGYFLRWNRDSEWECSHLSADLDWKNIAEPVMQLYTEATDGSSIEIKESALVWHHQDADPDFGSCQAKELLDHLESVLANEPAVVTRGQHIVEVKPQGISKGLVAEKVISTMFNGGNPPDFVMCIGDDRSDEDMFETILRSVSCPSLPATPEIFACTVGRKPSKAKYFLDDTLDVVKLLQGLASSSNPKPRHLAQFQVSFESTI* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3895 862 Gene3D - 722 853 IPR023214 -
Amo13g3895 862 Gene3D - 592 707 IPR023214 -
Amo13g3895 862 TIGRFAM T6PP: trehalose-phosphatase 591 840 IPR003337 GO:0003824|GO:0005992
Amo13g3895 862 Pfam Trehalose-phosphatase 596 829 IPR003337 GO:0003824|GO:0005992
Amo13g3895 862 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 61 550 - -
Amo13g3895 862 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 853 IPR001830 GO:0003824|GO:0005992
Amo13g3895 862 CDD GT20_TPS 61 546 IPR001830 GO:0003824|GO:0005992
Amo13g3895 862 Gene3D Glycogen Phosphorylase B; 314 530 - -
Amo13g3895 862 Gene3D Glycogen Phosphorylase B; 55 313 - -
Amo13g3895 862 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 594 795 IPR006379 -
Amo13g3895 862 Pfam Glycosyltransferase family 20 61 546 IPR001830 GO:0003824|GO:0005992
Amo13g3895 862 CDD HAD_TPP 594 835 - -
Amo13g3895 862 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 1 853 - -
Amo13g3895 862 SUPERFAMILY HAD-like 593 840 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3895 Amo-Chr13 130658941 130663698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3895 1 862 Trehalose Biosynthesis Gene Families AT1G23870 74.424 0.0 1361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3895 K16055 - gmx:100775779 1586.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3895 13 130658941 130663698 Amo13g3895 13 130658941 130663698 ECH