Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3892 ATGAACAGAAACGCGACGAGGAGAGGGAAGATCGCGATAAGGAGGATCAACAATTCCACGAGCAGGCAAGTGAAGTTCTCAAAGCGAAGGAACGGTTTGTTGAAGAAGGTGAAGGAGCTTGCAATTTTGTGCGATGTTGAGGTTGGGGTTATGATCTTTTCCAGCACTAACTCTATGATTTCTCCAGTACCAGCTGCTCAAGAATCAGAAAAAGGCAAGGGCTGGAAGCGATTTGAGTTTGACAAGGATGCGCCTCTTGAAGATGAGGAAATTGAAGTGGCTGAAGATGATGCTTCCTTGGTCAAGCAAATTGGCCAGAGTTTTCGGTATTCTAAAATAGAGGCAAGAAGGAAGGAACAAATCCAAGCTGCTCATGACGAAGCCATGTTTGGTGCTTCAGCACTTCCACCTCCTACCAGTACTGATAATGAACCTGAACAGGAGAATGAGAAAGAAGTTGATAAAAAAGCTGTTGTTACAAGCCTCTTAAGTGAAACGGTGCTGGCCAAGAGAAAAGGATCTTGGCGTGATCGAGTTCAAGAATCATAG 549 0.4463 MNRNATRRGKIAIRRINNSTSRQVKFSKRRNGLLKKVKELAILCDVEVGVMIFSSTNSMISPVPAAQESEKGKGWKRFEFDKDAPLEDEEIEVAEDDASLVKQIGQSFRYSKIEARRKEQIQAAHDEAMFGASALPPPTSTDNEPEQENEKEVDKKAVVTSLLSETVLAKRKGSWRDRVQES* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3892 182 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Amo13g3892 182 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Amo13g3892 182 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Amo13g3892 182 PANTHER SERINE/ARGININE-RELATED PROTEIN 53 65 181 IPR034604 GO:0000380|GO:0000398
Amo13g3892 182 MobiDBLite consensus disorder prediction 121 156 - -
Amo13g3892 182 ProSiteProfiles MADS-box domain profile. 6 59 IPR002100 GO:0003677|GO:0046983
Amo13g3892 182 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
Amo13g3892 182 Gene3D - 19 113 IPR036879 GO:0003677|GO:0046983
Amo13g3892 182 SUPERFAMILY SRF-like 7 63 IPR036879 GO:0003677|GO:0046983
Amo13g3892 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3892 Amo-Chr13 130549937 130551903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3892 8 59 MADS-box Gene Family AT2G14210 78.846 7.77e-22 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo13g3892 SRF-TF 6.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3892 - - ahf:112754627 281.952