Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3883 ATGGGAGATATATTGCCGCATAAATATGGTTGCTGCTTAGTATTCTGGAGACGCGGAACAACCTCGGAGACTTCTACTCCCATTGCCAAAATCAATGACAACAATTTTGTGAAGGAACCGAACCCAAAAAACATGAAAAGGTATGGAGGTGGCTCCAAAGATGCATCTTCGGTGCCAACAACTACGTCCAAAGCCCAGGATTATTCATCACGTTCTAACTCCTCCAAGCCTCATCAATACAAGCCAACTCTTGCTGTGACCGAAAATAAAGTACGAGGCACATCAAGAGTTTCACCTGCTGAGGGCTATGTCACTCAAGGAAAGAGGGTGCCCCAAGAAGCCGTTGGCATATCTGGCGAGCTCGAAAGAATGATCATGGATCACCACAAGTCCAATGGAAGCAGTACCCTTGTTAGAGCTTCATCAAGCAATGTCATGCTGGCTGGTGATTTAGGTAACCTGAGGCAACAGAGTACCAATTCAAGCAATAGTGCTGTGGGCAAACATATTAGGCAAGAAAACCCAGACCCGGTTGCTTATAACGGAAGAAACACAAATCCTACGGAGCAAAATGTGGCCAGAATAGAAAAGAAAGACTCTGCTTCTTTTTGCAGAGCACTATCTATTAGAATGGATCCAGAGCAGTTGAAGATCATGGGAAATGAAGATTACAAGAATGGGAGGTTTGAAGAGGCTTTAGCTTTGTATGATGCTGCGATTGCGCTTGATCCGAATAAGGCATCGTATAGGAGCAACAGAAGTGCAGCATTAACTGCACGTGGTAGGCTCTTGGAAGCTGTGTTTGAGTGTAGAGAAGCCATCCAAATAGAGCCTCATTACCATAGAGCTCATCATCGATTGGGAAACTTGTACACAAGATTAGGGGAAACAGATAAGGCCCTTTATCATTATAAACATGCAGGACCTGAGGTTAATCCAGAAGAGATTGCAAGAGCAAAGAATCTTCAGCTCCAGCTAAACAAGTGCACCGAGGCTCGCAGGTTAGGAGATTGGAACAACCTCATCAAGGAGACTAATAACGCTATATCATGCGGTGCAGATTCCGCTCCACAGATATTTGCATTGCAAGCAGAAGCATTTTTAAAGCTCCGAAGGCATCAAGATGCAGACGAAGCAATGTCAAAGGGTCCAAAGTTTAAAGTTGAGGATTGTACCAAGTTCTTTGGAGCCATAAGCAATGCAAATTTGTTGGTGACTCGGGCTCAAGTTGATTTGGTTGCTGGCAGATTTGAAGCTGCATTAGAAGCAGTTCAAGAAGCAGGTAGGCTAGACTCAAATAACAGGGAGGTTAGCAAAGTGATGAGGAAGGCGAAAGGCATGGCAGCTGCAAGATCAAACGGCAACAACCTTTTCAAGGAATCGAAATTCTCCGAGGCTTGTGCTGCCTATGAAGAGGGTCTTGCCCATGATCCTTATAACTCGGTTTTGCTATGCAACCGAGCTGCTTGTAGAGCAAACTTAGCTCAATACGACAAAGCTGTGGAAGATTGTACGGCTGCTCTTAGTTTGCGCCCATCTTACACCAAGGCCAGGTTGAGAAGAGCTAATTGTAATGCAAAGTTGAAAAAATGGGAAGCTGCAATACAAGACTATGAAATATTGGTAAAAGAGACACCGGAAGATGAGGAAGTAAGTAGGGCTTTGTTGGAGGCCAAAGCGCAACTCAGTAAAAAGTAA 1698 0.4446 MGDILPHKYGCCLVFWRRGTTSETSTPIAKINDNNFVKEPNPKNMKRYGGGSKDASSVPTTTSKAQDYSSRSNSSKPHQYKPTLAVTENKVRGTSRVSPAEGYVTQGKRVPQEAVGISGELERMIMDHHKSNGSSTLVRASSSNVMLAGDLGNLRQQSTNSSNSAVGKHIRQENPDPVAYNGRNTNPTEQNVARIEKKDSASFCRALSIRMDPEQLKIMGNEDYKNGRFEEALALYDAAIALDPNKASYRSNRSAALTARGRLLEAVFECREAIQIEPHYHRAHHRLGNLYTRLGETDKALYHYKHAGPEVNPEEIARAKNLQLQLNKCTEARRLGDWNNLIKETNNAISCGADSAPQIFALQAEAFLKLRRHQDADEAMSKGPKFKVEDCTKFFGAISNANLLVTRAQVDLVAGRFEAALEAVQEAGRLDSNNREVSKVMRKAKGMAAARSNGNNLFKESKFSEACAAYEEGLAHDPYNSVLLCNRAACRANLAQYDKAVEDCTAALSLRPSYTKARLRRANCNAKLKKWEAAIQDYEILVKETPEDEEVSRALLEAKAQLSKK* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3883 565 Pfam Tetratricopeptide repeat 283 307 IPR019734 GO:0005515
Amo13g3883 565 MobiDBLite consensus disorder prediction 154 186 - -
Amo13g3883 565 MobiDBLite consensus disorder prediction 154 169 - -
Amo13g3883 565 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 13 565 IPR044534 -
Amo13g3883 565 Gene3D Tetratricopeptide repeat domain 211 565 IPR011990 GO:0005515
Amo13g3883 565 Pfam TPR repeat 220 253 - -
Amo13g3883 565 MobiDBLite consensus disorder prediction 54 94 - -
Amo13g3883 565 PANTHER OS01G0616333 PROTEIN 13 565 - -
Amo13g3883 565 Coils Coil 521 541 - -
Amo13g3883 565 ProSiteProfiles TPR repeat profile. 213 246 IPR019734 GO:0005515
Amo13g3883 565 SMART tpr_5 213 246 IPR019734 GO:0005515
Amo13g3883 565 SMART tpr_5 247 280 IPR019734 GO:0005515
Amo13g3883 565 SMART tpr_5 447 480 IPR019734 GO:0005515
Amo13g3883 565 SMART tpr_5 481 514 IPR019734 GO:0005515
Amo13g3883 565 SMART tpr_5 515 548 IPR019734 GO:0005515
Amo13g3883 565 SMART tpr_5 281 315 IPR019734 GO:0005515
Amo13g3883 565 SMART tpr_5 401 434 IPR019734 GO:0005515
Amo13g3883 565 Pfam Tetratricopeptide repeat 495 548 - -
Amo13g3883 565 MobiDBLite consensus disorder prediction 25 105 - -
Amo13g3883 565 SUPERFAMILY TPR-like 212 551 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3883 Amo-Chr13 130335925 130337957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3883 214 348 U-box Gene Family AT3G07370 30.612 1.79e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3883 - - adu:107480447 813.142