Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3874 ATGCTCACTATGACGCAACAGAATGTGGTTGTGCCCGCCGAGGAGACTAAAAGGGCGCAAAAGCCACCGGCTATACCGGGAGCCTACATTCCCATTCCCAGGAGGACTGTCTTGAAGACCCTTGAAATCAATGCTTGGCTTGACTCCATGAGAGCTTCTTCTCCCACTCATCTCAAATCCACTCCTTCTCTCGCTCAAGACCACTCCTCTTCTTGGATTCTTAACCACCCATCGGCACTAGACATGTTTCAACAAATCATACATGCATCAAAGGGAAAGCAAATAGTCATGTTTCTCGACTATGATGGCACCTTGTCACCCATAGTCGATGACCCCGATCGTGCTTTCATGTCCGATTCAATGAGAAAGACTGTGAGGAAGCTTGCAACGTGTTTTCCTACTGCTATAGTTACGGGCAGATGCAGAGACAAGGTATATAACTTTGTTCGGTTGGCGGAACTATATTATGCTGGAAGCCATGGCATGGATATAAAAGGCCCAACAAAGACCTCCAAATATAACAAAGACACCAAGTCAGAGGCAGTTCTTTTTCAACCTGCCGCTGAATTTCTTCCTCTCATAGATGAGGTGTACCAACAGTTGGTTGAGAAAACGAAATCAACTCCTGGTGCCCGGGTGGAGAACAACAAATTTTGTGTCTCTGTTCATTTTCGTTGTGTTGACGAGAAGAAATGGAGTGAACTGGCGCAACAAGTAAGATCAGTGTTAAAGAAGTACCGGAAGCTTCGTCTTAGCCAAGGGAGGAAGGTATTGGAGATTCGTCCTACTATTAAATGGGACAAAGGGAAGGCCCTCGATTTTTTGTTAGAGTCTCTTGGATTTGCCAACTGTAGTGATGTATTTCCTGTTTATATTGGAGATGATAGAACCGATGAAGACGCATTCAAGAAATTGAGAGACAGAGGACAAGGTCTTGGAATTCTTGTCTCGAAATTTCCGAAAGACACTAATGCAGCATACTCTTTACAAGAACCTAATGAGGTTATGGACTTTCTTCAACGTTTGGTGGAGTGGAAGAAAGAATCCCTGCAAGCATCTTCTAGGGTGTAA 1071 0.4444 MLTMTQQNVVVPAEETKRAQKPPAIPGAYIPIPRRTVLKTLEINAWLDSMRASSPTHLKSTPSLAQDHSSSWILNHPSALDMFQQIIHASKGKQIVMFLDYDGTLSPIVDDPDRAFMSDSMRKTVRKLATCFPTAIVTGRCRDKVYNFVRLAELYYAGSHGMDIKGPTKTSKYNKDTKSEAVLFQPAAEFLPLIDEVYQQLVEKTKSTPGARVENNKFCVSVHFRCVDEKKWSELAQQVRSVLKKYRKLRLSQGRKVLEIRPTIKWDKGKALDFLLESLGFANCSDVFPVYIGDDRTDEDAFKKLRDRGQGLGILVSKFPKDTNAAYSLQEPNEVMDFLQRLVEWKKESLQASSRV* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3874 356 Pfam Trehalose-phosphatase 98 332 IPR003337 GO:0003824|GO:0005992
Amo13g3874 356 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 16 355 IPR044651 GO:0004805|GO:0005992
Amo13g3874 356 SUPERFAMILY HAD-like 96 345 IPR036412 -
Amo13g3874 356 Gene3D - 198 355 IPR023214 -
Amo13g3874 356 Gene3D - 95 190 IPR023214 -
Amo13g3874 356 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 16 355 - -
Amo13g3874 356 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 97 308 IPR006379 -
Amo13g3874 356 CDD HAD_TPP 96 336 - -
Amo13g3874 356 TIGRFAM T6PP: trehalose-phosphatase 93 343 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3874 Amo-Chr13 130225113 130227671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3874 80 342 Trehalose Biosynthesis Gene Families AT1G60140 25.267 6.41e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3874 K01087 - gmx:100794430 587.8