Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3872 ATGAAAGCACTTTACCCTTTTCTCCAAAGTGTTTCTTCATCGCCACCAGCTTCCTCTCCTCTTCCAAACCTCTTCTCACCCTCTTCCTCCATAGGCCTCAACAAACTCACCCCAACACAAATCATCCAAATCCAAGCGCAGTTYCAACTTCGCCAACTTCAACAGCAACAASTTATGTCTTCCACATGTGTCCAACACAGCAACCAAAAGCACCTTTCCCCAAAGGGGGTCCCCATGAAGCACGTGGCCACCACCCCAACCAAAGCCACAAAGCTTTACCGCGGTGTTAGGCAAAGACACTGGGGGAAGTGGGTGGCGGARATCAGACTCCCCAAGAACCGAACCCGCCTCTGGCTGGGAACCTTCGACACCGCAGAGGAAGCAGCTCTGGCATACGATAACGCGGCTTACAAGCTTCGCGGTGAATTCGCACGCCTCAAYTTCCCTCACCTTAAGCACCATGGYACCCGCGTCTTCGGTGAGTTTGGTGATTACAAGCCTCTCCCTTCTTCCGTGGATGCYAAGCTCCAAGCCATTTGCGACAAGTTGGCTCTTTCTCAGAAACAGGAGCCATGCCCCTCTCTTRTGAAGGTGGAGCAAGATCAAGTGCTTTATCCTGAGCTRGARGAKTTYAARGTGGAGTCGGATGAATCATGTGCAGGATCGTCCTCCCCTGAATCGGCTGCGACCACTCTTTTTGATTTCTCGGATTGTTGCAAGTGGGAGGAACCGGTGAGTTTTGGCTTGGAGAAGTTCCCCTCCGTGGAGATTGATTGGGCAGCCATATGA 789 0.512 MKALYPFLQSVSSSPPASSPLPNLFSPSSSIGLNKLTPTQIIQIQAQFQLRQLQQQQXMSSTCVQHSNQKHLSPKGVPMKHVATTPTKATKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAYKLRGEFARLNFPHLKHHGTRVFGEFGDYKPLPSSVDAKLQAICDKLALSQKQEPCPSLXKVEQDQVLYPELEXFKVESDESCAGSSSPESAATTLFDFSDCCKWEEPVSFGLEKFPSVEIDWAAI* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3872 262 ProSiteProfiles AP2/ERF domain profile. 92 149 IPR001471 GO:0003700|GO:0006355
Amo13g3872 262 CDD AP2 91 151 IPR001471 GO:0003700|GO:0006355
Amo13g3872 262 Pfam AP2 domain 93 142 IPR001471 GO:0003700|GO:0006355
Amo13g3872 262 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Amo13g3872 262 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Amo13g3872 262 Gene3D AP2/ERF domain 92 150 IPR036955 GO:0003700|GO:0006355
Amo13g3872 262 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 26 262 - -
Amo13g3872 262 SMART rav1_2 92 155 IPR001471 GO:0003700|GO:0006355
Amo13g3872 262 SUPERFAMILY DNA-binding domain 92 150 IPR016177 GO:0003677
Amo13g3872 262 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 26 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3872 Amo-Chr13 130142380 130143772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3872 1 262 AP2-EREBP Transcription Factor Family AT4G39780 54.104 4.95e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo13g3872 AP2 3.5e-15 CL0081