Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3858 ATGGAACGAAATGGTGACGGAAGGGTTCAAGATTCAGAGCCCCCAACTCCACATTCTGTTCTAAAGATGGGATTGAGGGATCGAACCAGCAGCATGGAGGATCCAGATGGAACATTAGCMAGCGTTGCCCAGTGCATTGAACAACTGCGCCAGAGCTCATCTTCSGCRCAYGAGAAAGAGTATTCCTTAAGGCAGTTATTGGAGCTTATAGAGATGCGAGAAAATGCTTTTAGTGCTGTTGGATCTCACTCTCAAGCAGTTCCAGTACTTGTTTCCCTTCTTCGGTCGGGTTCATTGAATGTAAAGATACAGGCAGCAACTGTCCTGGGCSCCCTTTGTAAAGAAAATGAGCTGAGGGTGAAAGTCTTGCTTGGAGGATGCATTCCTCCGTTGCTTGGTCTTCTAAARTCTAGTTCCACRGAAGGGCAAATTGCTGCTGCCAAGACTATTTATGCTGTCTCTCAAGATGGTGTGAAAGATCATGTTGGTTCGAAAATATTTTCAACTGAAGGTGTTGTACCAGTGCTCTGGCAGCAGCTGCAGAAGGGCTTGAAATCAGCAAATGTAGTCGAAAGTTTATTGACTGGAGCATTGAAAAATCTCGCCAGCAATACYGAGGGATTCTGGGGTGCAACCATGCAAGCTGGAGGAGTGGACATATTAGTCAAGTTACTGGCAACAGGACAGCCTGGCACCTTAGCTAATGTGTGYTTTTTGCTTGCTTCTGTTATGATGGAGGATGCATCTGCATGCTCAAAGGTGTTATCAGCAGACGTGACAAAACAACTCCTCAAACTATTAGGCCCTGGTAATGATGACTCTGTCAGGGCTGAAGCAGCTGGTGCTCTTAAGTCTCTATCTTCCCAGTGCAAAGAAGCAAGAAGAGAGATAGCAAATGCTAATGGTATTCCTGCATTAATCAATGCAACAATAGCTCCTTCCAAAGAGTTCATGCAAGGTGAGTGCGCTCAAGCATTACAGGAGAATGCAATGTGTGCTCTAGCAAACATATCTGGTGGTTTGTCTTTTGTCATATCTAGTCTTGGTCAAAGCCTTGACTCATGCACCACACCTAGCCAGGTTGCTGACACATTAGGAGCATTAGCTTCAGCTCTCATGATATATGATAACAAGGCAGAATCTACTAGAGCATCAGATCCTTCAGTGGTTGAACAAACATTACTCAAACAGTTTAAACCTCGCTTGCCMTTCCTTGTTCAGGAACGGACCATTGAAGCKCTTGCTAGTTTGTATGGAAATCCCATACTCTCGCTTAAACTTGCGAATTCTGGTGCAAAACATTTGCTTGTTGGTTTGATAACAATGGCTTCCAATGAAGTGCAAGATGAGCTCACAAAAKCTCTCTTGACCTTGTGCAATGGTGAAGCCAGTCTATGGCGTGCAATTCAAGGCCGTGAAGGAATTCAACTATTGATATCTCTTCTTGGGCTTTCATCAGAACAGCAGCAAGAATGTGCAGTTGCCTTGCTTTGCCTTCTAACTARTGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGCGGTATACCTCCACTTGTTCAAATTCTAGAGACAGGATCTGCAAAAGCAAAGGAAGACTCAGCAACCATCCTTAAGAACTTGTGCAACCACAGTGAAGACATACGAGCATGTGTCGAAAGTGCTGATGCTGTTCCTGCTTTGTTGTGGCTATTGAAGAATGGAAGCCCAAATGGGAAGGATATTGCAGCAAAGACATTAAATCATTTAATTCATAAATCTGATACTACGACTATCAGTCAGCTTACAGCATTATTGACTAGTGATCAGCCTGAATCTAAGATCTATATTCTGGATGCTTTGAGAAGTATGCTTTCTGTTGCGCCTCTTAGTGACATTCTACGTGAAGGTAGTGCTCCTAGTGATGCATTTGATACCATGATAGCATTACTGAGCTCTACCAAGGAAGAAACTCAGGCAAAGTCAGCATCAGCTCTGGCAGGAATTTTTGAATCAAGGAAAGACATTCGTGAAAGTAGCATTGCTGTTAAAGCTCTTAGTTCAGCCCTGAAATTGATTAATGTTGAATCTGAAAGTATCCTGATGGAGTCCTCACACTGCCTGGCTTCAATATTTCTATCCATCAAAGAAAACAGGGATGTAGCTGCTATTGCTAGAGCTGCATTATCCCGCTTAGTTGCACTCGCTAACTCTTCAGTTTTGGAAGTTGCAGAGATGGCAACATGTGCTGTGGCAAACATTATTTTGGATAGTGAAATTGCAGAAAAAGCTGTTACAGAAGAAGTTATCTTGCCTGCCACCAAAGTATTACGTGAAGGTACAATCTCTGGAAAAGCCCATGCAGCTGCAGCAATTGCTCGCCTCTTACATTCCCGGAAAGTTGATTCTGACGTAACCGATTGCGTAAATCGTGCTGGCACTGTTCTTGCATTAGTTTCTTTCTTAGATTCTGCTATTAGTGGATCTGTTGCCACATCAGAGGCTCTAGAAGCTCTTGCCATTCTGTCCAGGTCAGAAGAGTCCAGCACACAWAAYAAATCGGCTTGTGCAGTTTTGGCTGAATTCCCAAAGAGCATAAGTCCAATAGTCTTATCTATTGTTGATTCAGCACCAATGTTGCAGGATAAAGCTATTGAGATATTGTCTCGATTATGCAAGGATCTACCTATTGTTTTAGGTGACAATGTTGTTACTGCATCTGGATGTATATCTTCAATAGCTARGAGAATAAGTAGTTCCACAAATGTGAAGGTCAAAATTGGGGGAGCTGCACTTCTAATTTCTGCAGCAAAAGCAAATCATCAGAGACTTATGGAGGATCTCAATTCATCAAACTTGTGTGCTAATCTTATTCAATCTCTAGTTGATATTCTTATTTCTGCAGAGCCTTCTCTGGGTAATCAAGGTGATGACAAGAAGGAGCTAATCAGCATATGCAGGAGTACACAAGAAGAGGCCAATGRTGGTGAATCAAACACTGGCACGGCCATTATATCTGGTGCTGACTTAGCTATATGGTTATTATCTATTCTTGCTTGTCATGATGAAAAAAGTAGAAGTATCATAATGGAGGCTGGAGCAATTGATGTTCTAACTGACAGGATCTCAAATTGTTTCTCACAATATTCCCAGATTGACTACAAAGAAGATAGCAGCATGTGGATTTGTGCTTTGTTGTTAGCAATATTATTTCAAGATAGAGATATCATACGCACACATGCAACCATAAAATCTGTACCAGCACTTGCCAGTTTATTGAAGTCAGAAGAATTGGCAAACAAATATTTTGCTGCACAAGCAATAGCTAGCCTTGTCTGTAACGGTAGCAGGGGAACGCTTCTGTCTGTAGCAAATTCTGGTGCAGCTGGTGGACTTATCTCCTTGCTTGGCAGTGCTGATACTGATATTCATGATCTTCTGGAATTGTCAGAAGAATTTTTGTTGGTGCGTTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGATATAAGAGTTGGTGCCACTTCTCGGAAGGCAATGCCTGCCCTTGTTGATCTGCTCAAACCAATTCCAGATCGCCCAGGAGCCCCATTTTTAGCACTYGGGCTTTTGATTCAKCTTGGTAGAGATTGCCCATCCAATAAGCTTATAATGGTAGAGGCTGGAGCCTTAGAAGCACTTACGAAGTATCTTTCACTAAGTCCACAAGATGCAACTGAAGAAGCTGCTACAGATCTRCTAGGAATTCTGTTTAGCACTGCTGATATACGAAAACATGAGTCAGCATTCGGTGCTGTTGCTCAACTCGTTGCTGTCCTACGGCTAGGAGGAAGAGCTGCCAGGTTAAGTGCTGCAAAAGCCTTGGAAAGTTTATTCACTGCTGATCACATTAGAAATGCAGAGATGGCTCGMCAAGCTGTTCAACCTTTGGTGGAGATTCTTAGTACTGGTSCAGAGAGAGAGCAGCATGCTGCAATTGCTGCATTGGTTCGGTTACTGAATGAAAACCCATCAAAAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTGCAGGATCCTTTCATCGGATTGTTCRGTGGAACTCAAGGGGGATGCTGCTGAATTATGTTGTGCACTTTTTGGAAAYACAAGGATTCGATCCACAATGGCTTCTGCCCGCTGTGTCGAACCACTAGTCTCTCTCCTTGTAACTGAGTTTAGTCCTGCTCAGCTTTCAGTTGTTCGGGCATTGGATAGGCTTGTAGATGATGAGCAACTGGCTGAACTAGTTGCTGCACATGGTGCAGTTGTTCCTCTTGTCGGCCTACTGTATGGTCGGAACTATTTACTRCATGAGGCCATTTCCAGAGCTCTAGTCAAGTTAGGAAAAGACAGGCCTGCTTGTAAAATGGAAATGGTGAAAGCTGGAGTGGTTGAAAGCATACTTAGCATCKTACACGAAGCACCYGATTATCTATGTGCAGCGTTTGCAGAATTGTTGCGTATATTGACCAATAATGCTACCATAGCTAAAGGACAATCTGCTGCCAAAGTGGTTGAACCCTTGTTTATGTTGCTGACAAGACAAGAATTTATGCCCGAAGGSCTGCATAGCACATTGCAGGTSTTGGTTAATATCTTGGAACATCCACARTGTCGTGCAGACCATACATTGAGTTCTCGCCAAGTTATTGAACCACTTATCCCCTTGCTCGATTCTCCAATACCAGCAGTGCAACAGCTGGCTGCTGAGCTTCTTTCGCATCTACTTGTAGAAGAACACCTTCAGAAGGATCCRGTGACRCAGCAAGTAATTGGTCCCCTTATACGAGTTCTTAGTTCTGGTATACACATATTGCAGCAGAGAGCTGTAAAGGCTCTAGTTAGTATTGCTCTAACATGGCCAAATGAAATTGCCAAAGAGGGTGGYGTTGTTGAAATTTCCAAAGTAATATTGCARGCCGATCCTTCCATTCCRCATGCCTTATGGGAGTCTTCTGCCTCRGTTTTGTCGTGTATTCTGCAATTTAGTTCTGAATTCTACTTGGAAGTGCCTATTGCTGTGTTGGTAAGGTTGCTGCGGTCTGGCTCAGAGAGCACAGTTATTGGTGCATTAAATGCTCTGCTGGTGTTGGAAAGTGATGATGGAACTAGTGCAGTAGCTATGGCTGAAAGTGGTGCCATAGAGGCACTCTTGGAGCTCCTAAGGTCTCATCAGTGTGAGGAAACTGCTGCTAGACTCTTAGAAGTATTGCTGAACAATGTAAAGATCCGAGAAACAAAAGTCACTAAATCAGCCATTGTACCATTATCCCAGTACCTTTTGGATCCACAAACTCAAGCACAACAGGCAAGGTTATTGGCRACTTTAGCTCTTGGGGATCTGTTTCAGAATGAAGGTCTTGCTCGAACAGCTGATGCAGTTTCTGCATGTCGTGCTTTAGTGAATGTTCTCGAAGAACAACCGACAGAAGAAATGAAAGTTGTGGCCATCTGTGCTTTGCAAAATCTTGTGATGTATAGTCGMTCGAATAGGAGAGCTGTTGCAGAGGCTGGTGGTGTTCAGGTTGTATTGGATCTGATAAGTTCAAGTGAGCCAGATACATCCATTCAGGCTGCAATGTTCATTAAACTTCTCTTCTCAAATAATACAATTCAAGAGTATGCTTCCAGTGAAACAGTCAGAGCAATAACTGCTGCTATTGAAAAAGATTTATGGGCCTCTGGTACCGTGAATGAGGAGTACTTGAAAGCCTTAAATTCTCTCTTCAGCAACTTCCCACGACTGAGAGCAACTGAACCAGCAACACTTAGCATCCCCCATCTGGTTACATCCTTAAAGACAGGCTCAGAGGCTTGTCAGGAGGCTGCTTTGGATGCACTTTTTTTACTACGACAAGCTTGGTCGGCATGCCCTGCCGAAGTCTCAAGAGCTCAGTCAATTGCAGCTGCCGATGCTATTCCATTCCTGCAGTACTTGATCCAGTCCGGCCCACCTCGGTTTCAGGAGAAGGCAGAATTTCTGTTGCAGTGTTTGCCGGGGACATTGGTGGTGATCATCAAGCGTGGTAACAATATGAAGCAGTCCGTCGGAAACCCAAGTGTCTACTGTAAACTTACATTGGGAAACACCCCACCCAGGCAAACAAAGGTGGTGTCAACTGGCCCTAATCCAGAATGGGATGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCACATTTCATGCAAAAACAAGAGCAAAGTGGGAAAGAGTAAATTTGGAAAAGTAACAATACAAATTGATCGTGTGGTAATGCTTGGAGCAGTAGCTGGAGAGTATGCTCTATTGCCTCAAAGTAAAAGTGGGCCCCCAAGGAATCTAGAAATAGAATTTCAGTGGTCTAACAAGCCCATTGTTAATGCTGCTGAAGCTGCTGCTGCAGCTGCTGAGTAA 6435 0.4333 MERNGDGRVQDSEPPTPHSVLKMGLRDRTSSMEDPDGTLASVAQCIEQLRQSSSSAHEKEYSLRQLLELIEMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGXLCKENELRVKVLLGGCIPPLLGLLKSSSTEGQIAAAKTIYAVSQDGVKDHVGSKIFSTEGVVPVLWQQLQKGLKSANVVESLLTGALKNLASNTEGFWGATMQAGGVDILVKLLATGQPGTLANVCFLLASVMMEDASACSKVLSADVTKQLLKLLGPGNDDSVRAEAAGALKSLSSQCKEARREIANANGIPALINATIAPSKEFMQGECAQALQENAMCALANISGGLSFVISSLGQSLDSCTTPSQVADTLGALASALMIYDNKAESTRASDPSVVEQTLLKQFKPRLPFLVQERTIEALASLYGNPILSLKLANSGAKHLLVGLITMASNEVQDELTKXLLTLCNGEASLWRAIQGREGIQLLISLLGLSSEQQQECAVALLCLLTXENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTLNHLIHKSDTTTISQLTALLTSDQPESKIYILDALRSMLSVAPLSDILREGSAPSDAFDTMIALLSSTKEETQAKSASALAGIFESRKDIRESSIAVKALSSALKLINVESESILMESSHCLASIFLSIKENRDVAAIARAALSRLVALANSSVLEVAEMATCAVANIILDSEIAEKAVTEEVILPATKVLREGTISGKAHAAAAIARLLHSRKVDSDVTDCVNRAGTVLALVSFLDSAISGSVATSEALEALAILSRSEESSTXNKSACAVLAEFPKSISPIVLSIVDSAPMLQDKAIEILSRLCKDLPIVLGDNVVTASGCISSIAXRISSSTNVKVKIGGAALLISAAKANHQRLMEDLNSSNLCANLIQSLVDILISAEPSLGNQGDDKKELISICRSTQEEANXGESNTGTAIISGADLAIWLLSILACHDEKSRSIIMEAGAIDVLTDRISNCFSQYSQIDYKEDSSMWICALLLAILFQDRDIIRTHATIKSVPALASLLKSEELANKYFAAQAIASLVCNGSRGTLLSVANSGAAGGLISLLGSADTDIHDLLELSEEFLLVRYPDQVALERLFRVDDIRVGATSRKAMPALVDLLKPIPDRPGAPFLALGLLIXLGRDCPSNKLIMVEAGALEALTKYLSLSPQDATEEAATDLLGILFSTADIRKHESAFGAVAQLVAVLRLGGRAARLSAAKALESLFTADHIRNAEMARQAVQPLVEILSTGXEREQHAAIAALVRLLNENPSKALAVADVEMNAVDVLCRILSSDCSVELKGDAAELCCALFGNTRIRSTMASARCVEPLVSLLVTEFSPAQLSVVRALDRLVDDEQLAELVAAHGAVVPLVGLLYGRNYLLHEAISRALVKLGKDRPACKMEMVKAGVVESILSIXHEAPDYLCAAFAELLRILTNNATIAKGQSAAKVVEPLFMLLTRQEFMPEGLHSTLQVLVNILEHPQCRADHTLSSRQVIEPLIPLLDSPIPAVQQLAAELLSHLLVEEHLQKDPVTQQVIGPLIRVLSSGIHILQQRAVKALVSIALTWPNEIAKEGGVVEISKVILQADPSIPHALWESSASVLSCILQFSSEFYLEVPIAVLVRLLRSGSESTVIGALNALLVLESDDGTSAVAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAIVPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNRRAVAEAGGVQVVLDLISSSEPDTSIQAAMFIKLLFSNNTIQEYASSETVRAITAAIEKDLWASGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPFLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGAVAGEYALLPQSKSGPPRNLEIEFQWSNKPIVNAAEAAAAAAE* 2145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3858 2144 SUPERFAMILY ARM repeat 1293 1633 IPR016024 -
Amo13g3858 2144 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2009 2115 IPR035892 -
Amo13g3858 2144 Gene3D - 1781 2007 IPR011989 -
Amo13g3858 2144 SUPERFAMILY ARM repeat 1053 1265 IPR016024 -
Amo13g3858 2144 MobiDBLite consensus disorder prediction 1 37 - -
Amo13g3858 2144 Pfam Armadillo/beta-catenin-like repeat 504 543 IPR000225 GO:0005515
Amo13g3858 2144 Gene3D - 892 1144 IPR011989 -
Amo13g3858 2144 SMART C2_3c 2010 2106 IPR000008 -
Amo13g3858 2144 CDD C2 2011 2101 - -
Amo13g3858 2144 SMART arm_5 546 586 IPR000225 GO:0005515
Amo13g3858 2144 SMART arm_5 247 288 IPR000225 GO:0005515
Amo13g3858 2144 SMART arm_5 1292 1331 IPR000225 GO:0005515
Amo13g3858 2144 SMART arm_5 1418 1458 IPR000225 GO:0005515
Amo13g3858 2144 SMART arm_5 1836 1876 IPR000225 GO:0005515
Amo13g3858 2144 SMART arm_5 463 502 IPR000225 GO:0005515
Amo13g3858 2144 SMART arm_5 115 155 IPR000225 GO:0005515
Amo13g3858 2144 SMART arm_5 73 114 IPR000225 GO:0005515
Amo13g3858 2144 SMART arm_5 1377 1417 IPR000225 GO:0005515
Amo13g3858 2144 SMART arm_5 796 838 IPR000225 GO:0005515
Amo13g3858 2144 SMART arm_5 1709 1748 IPR000225 GO:0005515
Amo13g3858 2144 SMART arm_5 504 544 IPR000225 GO:0005515
Amo13g3858 2144 SMART arm_5 290 339 IPR000225 GO:0005515
Amo13g3858 2144 SMART arm_5 1548 1586 IPR000225 GO:0005515
Amo13g3858 2144 SMART arm_5 711 750 IPR000225 GO:0005515
Amo13g3858 2144 SMART arm_5 1208 1249 IPR000225 GO:0005515
Amo13g3858 2144 Gene3D - 1380 1674 IPR011989 -
Amo13g3858 2144 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 515 557 IPR000225 GO:0005515
Amo13g3858 2144 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 5 2130 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Amo13g3858 2144 Gene3D - 382 634 IPR011989 -
Amo13g3858 2144 Gene3D - 1156 1379 IPR011989 -
Amo13g3858 2144 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 5 2130 - -
Amo13g3858 2144 Gene3D - 1675 1780 IPR011989 -
Amo13g3858 2144 Gene3D C2 domain 2008 2135 IPR035892 -
Amo13g3858 2144 SUPERFAMILY ARM repeat 35 620 IPR016024 -
Amo13g3858 2144 SUPERFAMILY ARM repeat 639 1107 IPR016024 -
Amo13g3858 2144 Gene3D - 635 890 IPR011989 -
Amo13g3858 2144 ProSiteProfiles C2 domain profile. 1990 2107 IPR000008 -
Amo13g3858 2144 SUPERFAMILY ARM repeat 1559 2005 IPR016024 -
Amo13g3858 2144 Gene3D - 29 381 IPR011989 -
Amo13g3858 2144 Coils Coil 276 303 - -
Amo13g3858 2144 Pfam C2 domain 2009 2099 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3858 Amo-Chr13 129676743 129686118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3858 249 607 U-box Gene Family AT3G46510 25.543 1.38e-06 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3858 - - gmx:100794002 3535.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3858 13 129676743 129686118 Amo13g3858 13 129676743 129686118 ECH
Amo13g3858 13 129676743 129686118 Amo03g2963 03 121649734 121659101 hybridization
Amo13g3858 13 129676743 129686118 Amo20g1221 20 24636413 24646325 PCT