Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3852 ATGACAGGAATATCAGAAGTGTTGTATCAGCTGTACGCTAAAGCAATAGTGCTATTAGCATACATGCTCATAGAACTTGTCCTTCTTATTCAGTACCTCAAATCAGACAAACGCAGCAGCACCACAATCACCACCACTCAGTATCTCAGATTCATTGAAGAGAAGAACCCCACAATTCTCTACACCAAGAGCATGATGCAGCAACTGGATCCTGTTGAATGCAGAGTGTGCTTGAATGAGTTCCATGAAGGTGATCAATTGAGGAACCTCAAGTGTCACCACGCTTTTCATAGGGATTGTTTGGACAAGTGGTTGCAACAATCTTTTGCTACTTGCCCTCTTTGCAGGATCAAGCTGTTACCTGATTATGTTGTTGCAAAGTATCAGAATAATAACCATAATCATCATCAGAACAATATTACTGAGGTAGAGTATTATGAAGGCAATGATGATCAGCTTATTCTTTTTTTATCTTCACTGAGGGGTAGTAATCGTACATTGCATAGATATCTCTGA 516 0.3973 MTGISEVLYQLYAKAIVLLAYMLIELVLLIQYLKSDKRSSTTITTTQYLRFIEEKNPTILYTKSMMQQLDPVECRVCLNEFHEGDQLRNLKCHHAFHRDCLDKWLQQSFATCPLCRIKLLPDYVVAKYQNNNHNHHQNNITEVEYYEGNDDQLILFLSSLRGSNRTLHRYL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3852 171 SUPERFAMILY RING/U-box 64 123 - -
Amo13g3852 171 Pfam Ring finger domain 73 116 IPR001841 -
Amo13g3852 171 PANTHER - 1 164 - -
Amo13g3852 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 122 IPR013083 -
Amo13g3852 171 SMART ring_2 74 115 IPR001841 -
Amo13g3852 171 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Amo13g3852 171 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 164 - -
Amo13g3852 171 CDD mRING-H2-C3H2C2D_ZSWM2 73 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3852 Amo-Chr13 129513916 129514559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3852 16 116 C3H Transcription Factor Family AT5G45290 41.509 1.29e-18 80.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3852 13 129513916 129514559 Amo13g3852 13 129513916 129514559 ECH
Amo13g3852 13 129513916 129514559 Amo20g1229 20 25075772 25076795 PCT