Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo13g3849 | ATGAATTCTCCAACTTCACACTTTGTTCCCCCAAGAAGGATGGGAGTATATGATCCAATCCACCAGATTAGTATGTGGGAAGAGAATTTCAGAAGTAATGTTAGTTTAAGTGCATCAACGCTCTTAATTGATGATGCGGAGATTAAGTTTGACAATCAGTCAGAATATGCTTCTCATGGAATACCAGGAACATCTAAACAATATGACCAAGAAGCTAACAGACTTGCTGATAAGATACAGAGACGCCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTTTGCGCAAAAAGGCCTATGTACAGCAACTAGAATCATGTCGCGTGAAGCTAATGCAGTTAGAGCAAGAGGTTGATCATGCAAAACAACAGGGATTACATATTGGTGGTACTGGATTGGGTTCTAATAGTTTGGGTTTTGCTGCCTCTTTAAATTCAGGAATAGCAAACTTCGAGATGGAGTATGGACGTTGGCTAGAAGAGCGGAATAGACATACCTTGGCACTTAGAAATGCTTTAAGTTCTCATATGGGTGACGTAGAACTCGGAGAACTTGTAGATGGCACAATGAACCACTATTTTAAACTCTTTGGCATGAAATCTGCTGCTGCAAAAGCTGATGCTTTCTACGTTATGTCCGGCATGTGGAAATCATCAGCCGAACGATTTTTCTTCTGGATTGGAGGCTTTCGCCCCTCAGAAATTCTAAAGATTCTGGTACCTAGGATTGAAACCATGACAGAGCAACAAAGGTCAGACATAAGCAACCTTGGAAAATCTTGTCAGCAAGCAGAAGATGCCCTTTCACAAGGCATGGACAAACTTCAACAAATGGTTTCAGAATCTGTAGCAGCAGGACAACTTGAAGAACAAACTAACACTCCAAACATGTCTACTGCAATGGAGAGATTGGCAGCTCTAGTGAGCTTTGTGAACCAAGCTGATCATCTGCGACAGGAAACATTGCTGCAAATGTCTCGAATACTTACAAAACGGCAGGCTGCGAGGTGGCTTCTTGCCTTGGGGGAATATTTTCAACGCCTGCAAGCTTTGAGCTCTTTCTGGGCTAATCGTCCTTCCAAACCTGCTGAGTGCTTAATACCTTAG | 1107 | 0.4273 | MNSPTSHFVPPRRMGVYDPIHQISMWEENFRSNVSLSASTLLIDDAEIKFDNQSEYASHGIPGTSKQYDQEANRLADKIQRRLAQNREAARKSRLRKKAYVQQLESCRVKLMQLEQEVDHAKQQGLHIGGTGLGSNSLGFAASLNSGIANFEMEYGRWLEERNRHTLALRNALSSHMGDVELGELVDGTMNHYFKLFGMKSAAAKADAFYVMSGMWKSSAERFFFWIGGFRPSEILKILVPRIETMTEQQRSDISNLGKSCQQAEDALSQGMDKLQQMVSESVAAGQLEEQTNTPNMSTAMERLAALVSFVNQADHLRQETLLQMSRILTKRQAARWLLALGEYFQRLQALSSFWANRPSKPAECLIP* | 369 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo13g3849 | 368 | Pfam | Seed dormancy control | 168 | 240 | IPR025422 | GO:0006351|GO:0043565 | |
| Amo13g3849 | 368 | PANTHER | BZIP FAMILY TRANSCRIPTION FACTOR | 1 | 363 | - | - | |
| Amo13g3849 | 368 | Coils | Coil | 97 | 124 | - | - | |
| Amo13g3849 | 368 | ProSiteProfiles | DOG1 domain profile. | 148 | 358 | IPR025422 | GO:0006351|GO:0043565 | |
| Amo13g3849 | 368 | Gene3D | - | 76 | 127 | - | - | |
| Amo13g3849 | 368 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 81 | 96 | IPR004827 | GO:0003700|GO:0006355 | |
| Amo13g3849 | 368 | Pfam | bZIP transcription factor | 77 | 112 | IPR004827 | GO:0003700|GO:0006355 | |
| Amo13g3849 | 368 | SUPERFAMILY | Leucine zipper domain | 78 | 119 | IPR046347 | GO:0003700|GO:0006355 | |
| Amo13g3849 | 368 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 1 | 363 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo13g3849 | Amo-Chr13 | 129246939 | 129251925 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo13g3849 | 1 | 363 | Calmodulin-binding Proteins | AT5G65210 | 62.060 | 5.40e-168 | 472 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | bZIP | Amo13g3849 | DOG1 | 1.3e-27 | No_clan |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Amo13g3849 | 13 | 129246939 | 129251925 | Amo13g3849 | 13 | 129246939 | 129251925 | ECH | |
| Amo13g3849 | 13 | 129246939 | 129251925 | Amo03g2949 | 03 | 121404282 | 121409309 | hybridization | |
| Amo13g3849 | 13 | 129246939 | 129251925 | Amo20g1238 | 20 | 25421147 | 25425270 | PCT | |
| Amo13g3849 | 13 | 129246939 | 129251925 | Amo10g0817 | 10 | 12962905 | 12966946 | PCT |