LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g3845	ATGTTTTCCATAGCAATATTCTTGGTTTCTTTAACTTGTCTGTGGCTATGGGGATGCAGCAAGAAGGGTAAGAGATTACCTCCTGGTCCAAGAGGATTGCCAATCTTGGGGAGCCTTCACAAGCTGGGAGCTAACCCCCATCGCGTTCTGCACAAACTAGCACAAAAACATGGACCCATCATGTACCTGCGCCTAGGTTTTGTGCCAACCATTGTTGTTTCTTCATCCCAAGCTGCTGAATTGTTCCTCAAAACACATGACCATGTCTTTGCTAGCAGACCACCTATTGAAGCTGCAAAGTACATCTCTTGGGAGCAGAGAAATATGGTTTTTGCTGAATATGGCCCTTACTGGCGCAACATGCGTAAGATGTGCACATTGGAATTACTGAGCCACACCAAAATCAACTCCTTCAAAAGCATGAGGCAAGAGGAGGTTGACCTATTTATCAAGCTTATGAGAGAAACCGCCAGTGATGGAGTTGCTGTTGATCTTAGTGCCAAGGTTGCAGCACTAAGTGCAGACATGAGTTGTAGAATGATTTTGGGAAAGAAGTACATGGACGACGACTTGGACGAGAAAGGGTTCAAAGCTGTGATGCAAGAGATATTGTATTTGGCAGCAACTCCAAACATAGGTGACTTTATTCCTTACATAGGTGCACTTGATCTTCAAGGGTTAATTAAGCGCATGAAGAAAGTGCGCAAAATCTTTGATGACTTCCTTGACAAAGTTATACATGAGCACATGCTATCAGAAAACAAAAAAGACAAAGCTAAGGACTTTGTGGATGTCATGTTGAGCTTTGTTGGCACTGAAGAATCTGAATATCGTATGGAACAGCCTAATATCAAAGCAATATTGTTGGATATGCTGGTTGGTTCAATGGACACTTCAGCTACAGCAATTGAGTGGGCACTTTCAGAGCTAATAAAGCATCCAAGGGTGATGAAGAAAGTTCAAATGGAGTTGGAATCTGTGGTGGGTTTGAATAGGGTGGTGGAGGAGTCAGACTTGGACAAATTGGAGTATTTAGACATGGTCATCAAGGAAACCATGAGGATTCATCCAGTGGGACCATTACTAATACCACACCAATCTGTGGAAGATTGCATGGTTGCAGATTTCTTCATACCCAAAAATTCCAGGGTGATAATAAATGCATGGACAATTATGAGAGACCCAAGTGCTTGGACTGAGCCAGAGGAATTCTGGCCAGAGAGATTTGAGGGACAAGACATCGATGTTAAAGGGAAACACTTCCAACTGATACCATTTGGGTCTGGCAGAAGAGCATGTCCTGGATTACAGTTAGGGCTAACTGTGGTTCGATTAATGGTGGCACAACTTGTGCATTGCTTTGATTGGAAGTTACCAAATGGGATGTTGCCAAGTGAGTTGGACATGAATGAGGTGTTTGGCCTGACAATGCCTAGGGCCAATAATCTATTTGCCATTCCTACTTATCGGCTCAACAATGAAAGTGCAATAATTTTTTTTTCACTTATTTGTCTGTGGCTATGGGGATCCAACAACAAGGCTAAGAGATTACCTCCTGGTCCAAGAGGGTTGCCAATCTTGGGAAGCCTTCACCTCTTGGGGGGAAATCCTCATCGTGATCTTCACCGGCTAGCACAAAAATATGGATCTATCATGCACTTGCGCCTAGGTTTTGTTCCCACCATAGTTGTTTCTTCACCCCAAGCTGCTGAATTGTTCCTTAAGATCCATGACCATGTCTTTGCAAGTAGACCACCTAGTGAAGCTGCAAAGTACATCTTTTGTGGGCAGAGGGACATTGCCTTTGGTGAATACGGTCCTTATTGGCGCAACATGCGTAAGATGTGCACCTTGGAACTACTAAGCCAAACAAAGATCAACTCTTTCAGAAGCATGAGGCAAGAGGAGATTAACTTGTTTATCAAGCTTCTGAGAGATGCAGCCAATGATGGTGTTGCCGTTGATGTTAGTGCCAAGATTGCAACACTGAGTGCTAACATGAGTTGTAGAATGGTTCTGGGGAAGAAATACATGGATCAGGACATGGATAAAAAAGGGTTCAAATCTGTGATGCAAGAGTCATTGCGTTTAGCCGCCGTTCCAAACATAGGTGACTATATTCCGTATGTTGGTGCACTTAACCTTCAAGGATTAACTAAGGGCATGAAGGCAACGGGGAAAATATTTGATAACTTTTTTGAGAAAGTTATTGACGAGCACATTCAATCAGAGAGCAAAGAAGACAAGGTCAAGGACTTTGTGGATGTCATGTTGGGCTTTCTTGGCACTGAAGAATCTGATTATCGTGTTGATCGCCTGGATATCAAAGCCATATTGCTGGATATGATGCTGGCTTCAACAGATACTTCAGCTGCAGCAATAGAGTGGGCACTTTCAGAGCTAATAAAGCATCCAAGGGTGATGAAGAATCTTCAAATGGAGTTGGAATCTGTGGTGGGAATAAAGAGGGTAGTGGAGGAATCAGACTTGGACAAATTGGAGTATTTGGACATGGTCATCAAGGAAACCATTAGGATCCATCCAGTGGGACCATTACTAATACCACACCAATCCATGGAAGATTGCAAGGTTGGAGATTTCTTCATACCCAAGAAATCCAGGGTGATAATAAATGCATGGGCAATTATGAGAGATCTAAGTGCTTGGATTAAGCCAGAAGAATTTTGGCCAGAAAGGTTTGAGCGAATAGACGTTGATTTTAGAGGGAGAGACTTCCGATTTATACCATTTGGATCTGGCAGAAGAGGATGCCCTGGAATACAGCTAGCCCTAACTGTTGTCCGGTTAGTGGTGGCCCAGCTTGTGCATTGCTTTGATTGGAAGTTACCGAATAACTTGTTGCCAAGTGAATTAGACATGAGTGAGGAGTTTGGCCTCTCAATGCCTAGGGCCAACCATCTATTTGCCATTCCTTCTTATCGTCTTCACAATGAAAGGGATATTTCTTCTATGCATGATGTGCTGGTTGGTTCAATGAACAGTTCAGCTACAGCAATTGAGTGA	3024	0.4319	MFSIAIFLVSLTCLWLWGCSKKGKRLPPGPRGLPILGSLHKLGANPHRVLHKLAQKHGPIMYLRLGFVPTIVVSSSQAAELFLKTHDHVFASRPPIEAAKYISWEQRNMVFAEYGPYWRNMRKMCTLELLSHTKINSFKSMRQEEVDLFIKLMRETASDGVAVDLSAKVAALSADMSCRMILGKKYMDDDLDEKGFKAVMQEILYLAATPNIGDFIPYIGALDLQGLIKRMKKVRKIFDDFLDKVIHEHMLSENKKDKAKDFVDVMLSFVGTEESEYRMEQPNIKAILLDMLVGSMDTSATAIEWALSELIKHPRVMKKVQMELESVVGLNRVVEESDLDKLEYLDMVIKETMRIHPVGPLLIPHQSVEDCMVADFFIPKNSRVIINAWTIMRDPSAWTEPEEFWPERFEGQDIDVKGKHFQLIPFGSGRRACPGLQLGLTVVRLMVAQLVHCFDWKLPNGMLPSELDMNEVFGLTMPRANNLFAIPTYRLNNESAIIFFSLICLWLWGSNNKAKRLPPGPRGLPILGSLHLLGGNPHRDLHRLAQKYGSIMHLRLGFVPTIVVSSPQAAELFLKIHDHVFASRPPSEAAKYIFCGQRDIAFGEYGPYWRNMRKMCTLELLSQTKINSFRSMRQEEINLFIKLLRDAANDGVAVDVSAKIATLSANMSCRMVLGKKYMDQDMDKKGFKSVMQESLRLAAVPNIGDYIPYVGALNLQGLTKGMKATGKIFDNFFEKVIDEHIQSESKEDKVKDFVDVMLGFLGTEESDYRVDRLDIKAILLDMMLASTDTSAAAIEWALSELIKHPRVMKNLQMELESVVGIKRVVEESDLDKLEYLDMVIKETIRIHPVGPLLIPHQSMEDCKVGDFFIPKKSRVIINAWAIMRDLSAWIKPEEFWPERFERIDVDFRGRDFRFIPFGSGRRGCPGIQLALTVVRLVVAQLVHCFDWKLPNNLLPSELDMSEEFGLSMPRANHLFAIPSYRLHNERDISSMHDVLVGSMNSSATAIE*	1008

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo13g3845	1007	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	426	435	IPR017972	GO:0005506\|GO:0016705
	Amo13g3845	1007	PRINTS	E-class P450 group I signature	283	300	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Amo13g3845	1007	PRINTS	E-class P450 group I signature	346	364	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Amo13g3845	1007	PRINTS	E-class P450 group I signature	423	433	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Amo13g3845	1007	PRINTS	E-class P450 group I signature	387	411	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Amo13g3845	1007	PRINTS	E-class P450 group I signature	172	190	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Amo13g3845	1007	PRINTS	E-class P450 group I signature	303	329	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Amo13g3845	1007	PRINTS	E-class P450 group I signature	78	99	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Amo13g3845	1007	PRINTS	E-class P450 group I signature	54	73	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Amo13g3845	1007	PRINTS	E-class P450 group I signature	433	456	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g3845	Amo-Chr13	129227671	129233714	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo13g3845	525	982	Monolignol Biosynthesis Gene Families	AT4G36220	41.387	2.94e-122	381

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g3845	K20562		-	sspl:121786580	1204.12

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo13g3845	13	129227671	129233714	Amo03g2943	03	121374605	121380681	hybridization

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