Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3831 ATGGCGCCGAAGCAGAGAACAGCGAGGAAGGTGAGCCGGAACCCCGAACTGATTAGGGGAATCGGAAAGTACTCGAGGTCCAAGATGTACCACAAGAGGGGACTCTGGGCCATCAAGGCCAAAAACGGCGGCGTTTTGCCTCGCCACGATCCCAAACCTAAGCCTCAAGCACCTTCTCAGAAGCCTCCCAAATTTTATCCTGCTGATGACGTCAAGAAACCCCTTGTCAACAAGCACAAGCCCAAACCTACCAAGCTCAGGGCTAGCATTACTCCTGGAACAGTGCTGATTCTTCTAGCTGGCAGATTTAAGGGAAAGAGAGTAGTGTTCCTGAAGCAGCTTCCTTCGGGCTTGCTTCTTGTTACTGGCCCTTTCAAAATCAATGGAGTGCCTTTGAGACGTGTGAACCAATCCTACGTCATTGGTACATCAACCAAAGTAGATGTCTCTGGTGTTAATGTGGATAAATTTGATGACAAATATTTTGCAAAGGAAGCTGAGAAGAAGAAGAAAAAGGAAGAGGGAGAGTTCTTTGAATCAGAGAAAGAGGAGAAGAAAGTGCTGCCCCAGGAGAAGAAAGATGATCAGAAAACGGTGGACTCTGCTTTGTTAAAATCCATTGAAAGCGTTCTAGATTTGAAGGCATATATTGGTGCTAGGTTTTCCCTCAAGCAAGGCATGAAGCCTCATGAGCTAGTTTTTTAA 705 0.4638 MAPKQRTARKVSRNPELIRGIGKYSRSKMYHKRGLWAIKAKNGGVLPRHDPKPKPQAPSQKPPKFYPADDVKKPLVNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVSGVNVDKFDDKYFAKEAEKKKKKEEGEFFESEKEEKKVLPQEKKDDQKTVDSALLKSIESVLDLKAYIGARFSLKQGMKPHELVF* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3831 234 MobiDBLite consensus disorder prediction 172 199 - -
Amo13g3831 234 MobiDBLite consensus disorder prediction 41 86 - -
Amo13g3831 234 Gene3D - 88 174 IPR014722 -
Amo13g3831 234 PANTHER 60S RIBOSOMAL PROTEIN L6 1 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Amo13g3831 234 Pfam Ribosomal protein L6, N-terminal domain 3 62 IPR005568 GO:0003735|GO:0005840|GO:0006412
Amo13g3831 234 Pfam Ribosomal protein L6e 127 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Amo13g3831 234 PANTHER 60S RIBOSOMAL PROTEIN L6 1 234 - -
Amo13g3831 234 Coils Coil 163 183 - -
Amo13g3831 234 SUPERFAMILY Translation proteins SH3-like domain 88 174 IPR008991 -
Amo13g3831 234 CDD KOW_RPL6 82 234 IPR041997 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3831 Amo-Chr13 128952608 128954485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3831 1 234 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 81.624 6.73e-123 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3831 K02934 - pvy:116113922 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3831 13 128952608 128954485 Amo03g2913 03 120737324 120738812 hybridization