Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3803 ATGGGTTGCGTTAATGGTAAGCTAGATTCTCCCATTCAAAAACGCCGCAACTTAAACAGATTGAAAAAGGAGTACGCTTATGCCAATCCCAAACTAACTTCATCTTCTTCTGCATCAACCATGAAATTAAAAAGCTACAGTAACCATAGTTCTAACAGAAAAGTGAGTGTTAGTCATCCCAAAGATAATTACAGTAAGTTAAGGACTGGTGGCTATGGATATACAGATAAGGAAAAGGAAAAAATAGAGGAAAAAAAAACGGAAAAGAGTGTTGCTACTAATGACATTGGTAAGTTGATGGAGGAAGAATCTAAGTTGTCCGAAGACAATATGAAAAAGAAAAATAAAATTGCAGGGTATGAAGTCGGTGAAGGTTGGCCCAAATGGTTGGCTGATAATATCCCTAAAGAGGTTTTGTCTGCTTTGGTTGCCAAGAGCGCTGACTCTTATGAAAAACTTGACAAAATTGGACGTGGAACATATAGCAATGTCTACAAAGCTCGTGATAAGGATACTGGAAAGATTGTTGCCTTGAAAAAAGTTCGTTTCGATACATCTGATTCTGAAAGTATAAAATTCATGGCGAGAGAGATTATGATATTGCAGAAGCTGGATCATCCCAATGTCATCAAGCTTAGAGGATTGGCAACATCTAGGATGCAATATAGTCTTTATCTCGTCTTTGATTATATGCAATGTGATCTTTCCAGAATTATCTCTCGTCCTGATGAAAGACTCACTGAGCCTCATATCAAGTGTTACATGCAACAACTGCTTGCTGGGCTCCAACATTGTCATGAGAGGGGAATTATTCACCGAGATATCAAATCTTCCAACTTGCTAATAGATAGAAGAGGTTCTTTGAAAATAGCAGATTTTGGTCTTGCAAATGTTAAACATCAAGGCCCTCTTACAAACCGAGTGGTGACACTTTGGTATAGGGCTCCTGAACTCCTCTTAGGTTCGACTGACTATGGATATGACATTGATCTATGGAGTGCTGGATGCTTGTTGGCTGAGATGTTTGTCGGAAGACCATTCATGCCCGGAAGGACAGAGGTTGAGCAGCTTCACCTGATTTTCAAACTATGCGGGTCTCCTCCAGAAGATTATTGGATAAAAATGAAGCTAAGATCAAGCTACTTGCCCTCACAACATTACAAACCTAATTATGAGGACTACTTCCAAGGCTTTCCTTCCTCTTCATTGGATCTCTTGACCACACTTCTTCATCTTGACCCTGCATGTCGTGGCAGTGCTGCCTCTGCTCTTGAAACTGAATTCTTCAAAACTAGTCCATTAGCCTGTGACCCTTCAACCTTACCAGTGATCTACAAAGAAGAGGATGAACGCTCACATAAGAGACGCAAAAGACGCAAAGGTCACAATAACAAAGGGCAAATATCTTCTAAAACAAGGACAACTGGCACAAATGTATCAGAGAAGAACCAAACTGCTGAACAATCTTCAAAGGAACAGAAGATACAAGTTGAAGAAAAAGGAAGTAGCATAAACACATCGTTACAGTTGATAGAGGAAAAAAGCATGAATACATCAACATCAATGTCCCCGATATTTCTTTCTACGGAAAGAAAATCACCAAAAACAGAGGGCCATCCTAATGCTCTTAAGAACATAAAAAATTACACTCTTTTACAGGCCTCTTTCGATATCATGAATAGGAATGAAGGCAACGAACTTGGTCCATTGCGTAGGTCCTTTTCTGCATTGGAATTCCGCCTTGATCATCTTGAGAAGCTTTCAAGTCTCTATGGACCAAACAAGAACTTAGGCCTTGGAATTTAA 1806 0.3959 MGCVNGKLDSPIQKRRNLNRLKKEYAYANPKLTSSSSASTMKLKSYSNHSSNRKVSVSHPKDNYSKLRTGGYGYTDKEKEKIEEKKTEKSVATNDIGKLMEEESKLSEDNMKKKNKIAGYEVGEGWPKWLADNIPKEVLSALVAKSADSYEKLDKIGRGTYSNVYKARDKDTGKIVALKKVRFDTSDSESIKFMAREIMILQKLDHPNVIKLRGLATSRMQYSLYLVFDYMQCDLSRIISRPDERLTEPHIKCYMQQLLAGLQHCHERGIIHRDIKSSNLLIDRRGSLKIADFGLANVKHQGPLTNRVVTLWYRAPELLLGSTDYGYDIDLWSAGCLLAEMFVGRPFMPGRTEVEQLHLIFKLCGSPPEDYWIKMKLRSSYLPSQHYKPNYEDYFQGFPSSSLDLLTTLLHLDPACRGSAASALETEFFKTSPLACDPSTLPVIYKEEDERSHKRRKRRKGHNNKGQISSKTRTTGTNVSEKNQTAEQSSKEQKIQVEEKGSSINTSLQLIEEKSMNTSTSMSPIFLSTERKSPKTEGHPNALKNIKNYTLLQASFDIMNRNEGNELGPLRRSFSALEFRLDHLEKLSSLYGPNKNLGLGI* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3803 601 MobiDBLite consensus disorder prediction 514 542 - -
Amo13g3803 601 MobiDBLite consensus disorder prediction 446 502 - -
Amo13g3803 601 Pfam Protein kinase domain 150 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3803 601 ProSitePatterns Protein kinases ATP-binding region signature. 156 179 IPR017441 GO:0005524
Amo13g3803 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Amo13g3803 601 MobiDBLite consensus disorder prediction 514 530 - -
Amo13g3803 601 MobiDBLite consensus disorder prediction 22 72 - -
Amo13g3803 601 MobiDBLite consensus disorder prediction 29 54 - -
Amo13g3803 601 SMART serkin_6 150 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3803 601 PANTHER CELL DIVISION PROTEIN KINASE 96 536 - -
Amo13g3803 601 PANTHER CYCLIN-DEPENDENT KINASE 96 536 - -
Amo13g3803 601 SUPERFAMILY Protein kinase-like (PK-like) 145 435 IPR011009 -
Amo13g3803 601 Gene3D Phosphorylase Kinase; domain 1 138 232 - -
Amo13g3803 601 Gene3D Transferase(Phosphotransferase) domain 1 233 470 - -
Amo13g3803 601 MobiDBLite consensus disorder prediction 467 491 - -
Amo13g3803 601 Coils Coil 82 102 - -
Amo13g3803 601 ProSiteProfiles Protein kinase domain profile. 150 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3803 Amo-Chr13 128298274 128301045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3803 144 460 Core Cell Cycle Gene Families AT5G10270 47.041 3.48e-99 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Amo13g3803 Pkinase 2.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3803 K08819 - gmx:102667260 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3803 13 128298274 128301045 Amo13g3803 13 128298274 128301045 ECH
Amo13g3803 13 128298274 128301045 Amo03g2852 03 119579678 119582104 hybridization