Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3802 ATGTGTCTCCATCGCTGGTACCCACCTCTCTTCCCTCATGCCTGTATTTTTCCCGTCGCGAGTCTCCCTCTCATCCCCTGGCAGCCCTGGTCGAGGCCGGCCATCGTCGTACCGGTCGCGCGTTCTGGTGAGTGGCTCGCCTCTCTCTCCCGCGCCGAAGATGATGATGAGACTTGCTCCATTTGCTTGGTGGAGTTTGAAGATGAAGATGCTGTTAGCAAGCTCAGAAGGTGTAACCACATATTCCATCTTAGTTGCATTCAGCAATGGATAGAGCGAAATCAATTCTCATGCCCACTTTGTAGGTCCTTTTTATTTTCTCATAATCTTCATACCAGGGAATTCAATGAATACTAG 357 0.4986 MCLHRWYPPLFPHACIFPVASLPLIPWQPWSRPAIVVPVARSGEWLASLSRAEDDDETCSICLVEFEDEDAVSKLRRCNHIFHLSCIQQWIERNQFSCPLCRSFLFSHNLHTREFNEY* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3802 118 SUPERFAMILY RING/U-box 51 107 - -
Amo13g3802 118 Pfam Ring finger domain 58 102 IPR001841 -
Amo13g3802 118 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 39 106 - -
Amo13g3802 118 ProSiteProfiles Zinc finger RING-type profile. 59 102 IPR001841 -
Amo13g3802 118 PANTHER RING ZINC FINGER PROTEIN-RELATED 39 106 - -
Amo13g3802 118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 115 IPR013083 -
Amo13g3802 118 SMART ring_2 59 101 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3802 Amo-Chr13 128290318 128291974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3802 51 117 C3H Transcription Factor Family AT4G38140 46.269 6.28e-18 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3802 - - pvu:PHAVU_007G012000g 100.523