Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3774 ATGTATGCTTCAACTTCCTTCACTTCACACATAGTTCATGACCTTGTCATACAATCTCACTCAAGAAGGTTACTCATGCTCCCAAATCCACTTGCTCATCACGATTCCTCACCACCTCCAACAAGCGATTTATACCTCGGAAACAGTTCTTTCGATGCCAACGTTGTCATGGTCCTCTCCGTCCTCCTATGCGCACTTATTTGCTCCTTAGGATTGAACGCAATCATAAGGTGTGCTTTGAGGTGTTCCGATTTGGTAATCAACGACTCATCATCGTCGTCAAATCCTAGCCCTTCATCATCATCAAGTAGTCGATTGGCCAACACGGGAATCAAGAAGAAAGCTTTGAAGACTTTTCCGATAATCACATACGAGTCAACTGAGTTAAACAAAGTACCTGGTTTGGACACCGAGTGTGTGATATGCCTCTCGGACTTCACAAATGGTGAAAAGTTGCGCATTCTGCCAAAATGCAACCATGGCTTCCATGTTAGCTGCATTGACAAGTGGCTCACTTCTCATTCATCTTGCCCCAAGTGCAGACACTGCCTAATTCACACGTGCCAAAAGATTGTTGGCGGAACTACTCATCATCCTCCTCCTCTTCTACCTCAAACCATTATAAGGATTGAACCACTGGACCCAGAAACCATGGTGCGTAATTATATATAG 672 0.4435 MYASTSFTSHIVHDLVIQSHSRRLLMLPNPLAHHDSSPPPTSDLYLGNSSFDANVVMVLSVLLCALICSLGLNAIIRCALRCSDLVINDSSSSSNPSPSSSSSSRLANTGIKKKALKTFPIITYESTELNKVPGLDTECVICLSDFTNGEKLRILPKCNHGFHVSCIDKWLTSHSSCPKCRHCLIHTCQKIVGGTTHHPPPLLPQTIIRIEPLDPETMVRNYI* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3774 223 SMART ring_2 139 180 IPR001841 -
Amo13g3774 223 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 222 - -
Amo13g3774 223 Pfam Ring finger domain 138 181 IPR001841 -
Amo13g3774 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 185 IPR013083 -
Amo13g3774 223 CDD RING-H2_PA-TM-RING 138 181 - -
Amo13g3774 223 PANTHER RING-H2 FINGER PROTEIN ATL78 1 222 IPR044602 GO:0016567|GO:0016740
Amo13g3774 223 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Amo13g3774 223 SUPERFAMILY RING/U-box 132 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3774 Amo-Chr13 127273823 127274494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3774 23 185 C3H Transcription Factor Family AT3G10910 47.561 4.21e-46 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3774 K19040 - gmx:100527126 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3774 13 127273823 127274494 Amo08g2224 08 35280065 35282175 PCT
Amo08g2224 08 35280065 35282175 Amo13g3774 13 127273823 127274494 PCT