Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3762 ATGAGTGAACCTGGCAGAAAGCACTCTTCAAGGAGGGATTTGAGAGATGATGCTGAATTTGCAAGTAGTCGGAGTAGGAGCCCTGCATGCGATTTCAGGTGGGATTCAGAAGTCAGTGACAGAAAAAGAATGAGGTCTGGAGGATCAACACGACCATGTAGAGATTTCGCTGTTGGAAACTGCAGAAGAGGCAGCCATTGCCATTTCCTTCATGATGATAATCAAAACTATGATGATGGCTGGGAAAGTAGAAGCAGGCAAGACAGAGCTCTCAGATATTCTGCACCCCATGAGGGTGGGGACTATTCTCTTAGAAGTGGAAGATCTAATGATGCTTGTATTAATTTTGCAAAAGGATGGTGTAGAATGGGAGCATCATGCAAGTATGTACATCATCACGACAATGGGTTTCGTGAAATTTCCATTGCAGAATCAACTAGAGAAAGGGAAATTGATAGGAGGCACATGGAGAGTTCTTATGAGTGGGATGGTGCGCATCGTCCAAATCACAGTGGGGATATTCCTTGCAAATTTTTTGCTTTTGGCAATTGTCGAAACGGTAAAAATTGCAGGTTTTCTCATGATAGTCAAGCATTTCAGAGGCCTAACAGAAGTTTAAGGGATGATAGAACGAGTTATTATGGTGAACATGAGGCATTGGATATACAAAAATTGAATGATTCGATTAGTCCGAATGGAAGGCTAAGGGATGACAGATGTGGTTTCAAAAGCAACATGGCTGATGTAGATGAAGCTTGGGATGGTCCAGAAAAGAATGACTTAGGTGCTGTCGTTGATACAGAAAACCTGGTTGAGGACAACACAAACAGAATTTCAGGTGCCACAAAGCCTAGTTTCACTCATCGGCCAATGAATGATGTATTGGACTGCCGTTTAGATAAGGGCAGAGTGCATGCTCAATCACCGTTTCCGAGTGTGAAGAACGATACCAACTATTGGGAGACACAAAAGGCTGGAGACAACATGCGCAGTACCCAGTCAATAAATACAGTGATTTGGCCAGGTGATGAAAAAATGTCTCCCGATTGGAAGTTTGGTGTGGGATCTTTCTGCGGAACTGAAGAGAAGCATGAGCAGAATAAACAAGAAGTTACTCCAGGACAAAGATTTAATCAGAATGCTCAGAATCTAAATGCTTCAAGCTGTCAGGTTGTTGGTCAAAGTCAAATGCCAGTTTCCGTTGCTGCTTCAAGAGTGGGAATTGTAGAAGGTATGCAGAACCAGGAAATCAATGTGGAGAAAAAGTATACTGCTGAGCCAAACATCATGGAGGCGATTCTATCACAAATTAGTTCAAGAGATCCTTTATCTCAGAACATGGTTAGCAAAGAACGGCTTGCTCAACTAACCAGCATCTCAGCCACTCTGGCACATATCATTGGTTCAGCTAAGCAGCTTCCACAACTTAATGCTACTTCAAATTCTCATGATGCAAGGGATACTCCTTTACTAGGCAAATCTGAAGGGTCTTATTCTAATAATAAGCCAGTTTTTACGTTCGCCAAGTCGGATCCTGCCATTGGATCACAGAAGCAGTATGATCCAATTTGTGACAGTATTGAAACTAAGGATGCTCATGCAAATGGTGTCCCGCCATACTTTTCCCCAATTGTAAAAGTTATAAATGAAGTGGAAGAAATTCCAGCACCATCATCTAAGTCGACAAGACAAAATCTTGATTATTCTCGTAAAACTGCCTTTCCAGAAGGACCACTTGTTAAGTGTGACCACTCTATTCAGTTGCAGCAGCAAGGTGAAAATATTGAGATTAATAAGGAGAAAGATGTAGTGATAGCTGAGGAAAAGCAAAGTTTACAGTGTGCTAAAGAAATCACAAAAGAGAATATTCCTATGGAAAACATGGATCAAACTGGTGGAACTGATGAAGCCAAGAAAACAAAGGATGATAAAGGGGTTCGTGCATTTAAATATTCATTGGTGGAGTTTGTTAAGGAGCTGCTAAAACCAACATGGAAAGAAGGTCAAATCACCAAAGAAGATTATAAATCAATTGTGAAGAAAGTTGCTGATAAAGTAGTTGGCACGGTGCAGCGGGCACATATTCCTCAAACACAAGAGAAAATTGACCACTACCTATCATTGTCAAAACCAAAGCTTAACAAACTTCTACAGGCATATGTAGAAAAGGCACAGAAGGCATAG 2184 0.4125 MSEPGRKHSSRRDLRDDAEFASSRSRSPACDFRWDSEVSDRKRMRSGGSTRPCRDFAVGNCRRGSHCHFLHDDNQNYDDGWESRSRQDRALRYSAPHEGGDYSLRSGRSNDACINFAKGWCRMGASCKYVHHHDNGFREISIAESTREREIDRRHMESSYEWDGAHRPNHSGDIPCKFFAFGNCRNGKNCRFSHDSQAFQRPNRSLRDDRTSYYGEHEALDIQKLNDSISPNGRLRDDRCGFKSNMADVDEAWDGPEKNDLGAVVDTENLVEDNTNRISGATKPSFTHRPMNDVLDCRLDKGRVHAQSPFPSVKNDTNYWETQKAGDNMRSTQSINTVIWPGDEKMSPDWKFGVGSFCGTEEKHEQNKQEVTPGQRFNQNAQNLNASSCQVVGQSQMPVSVAASRVGIVEGMQNQEINVEKKYTAEPNIMEAILSQISSRDPLSQNMVSKERLAQLTSISATLAHIIGSAKQLPQLNATSNSHDARDTPLLGKSEGSYSNNKPVFTFAKSDPAIGSQKQYDPICDSIETKDAHANGVPPYFSPIVKVINEVEEIPAPSSKSTRQNLDYSRKTAFPEGPLVKCDHSIQLQQQGENIEINKEKDVVIAEEKQSLQCAKEITKENIPMENMDQTGGTDEAKKTKDDKGVRAFKYSLVEFVKELLKPTWKEGQITKEDYKSIVKKVADKVVGTVQRAHIPQTQEKIDHYLSLSKPKLNKLLQAYVEKAQKA* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3762 727 MobiDBLite consensus disorder prediction 1 30 - -
Amo13g3762 727 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 8 725 - -
Amo13g3762 727 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 72 IPR000571 GO:0046872
Amo13g3762 727 Gene3D - 168 240 - -
Amo13g3762 727 MobiDBLite consensus disorder prediction 478 497 - -
Amo13g3762 727 SUPERFAMILY CCCH zinc finger 173 195 IPR036855 GO:0046872
Amo13g3762 727 Gene3D - 45 149 - -
Amo13g3762 727 Pfam RNA-binding, Nab2-type zinc finger 112 131 - -
Amo13g3762 727 Pfam CCCH-type zinc finger 175 195 IPR041367 -
Amo13g3762 727 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 8 725 - -
Amo13g3762 727 SMART c3hfinal6 170 196 IPR000571 GO:0046872
Amo13g3762 727 SMART c3hfinal6 108 133 IPR000571 GO:0046872
Amo13g3762 727 SMART c3hfinal6 49 73 IPR000571 GO:0046872
Amo13g3762 727 ProSiteProfiles Zinc finger C3H1-type profile. 47 74 IPR000571 GO:0046872
Amo13g3762 727 ProSiteProfiles Zinc finger C3H1-type profile. 107 134 IPR000571 GO:0046872
Amo13g3762 727 MobiDBLite consensus disorder prediction 1 22 - -
Amo13g3762 727 ProSiteProfiles Zinc finger C3H1-type profile. 175 197 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3762 Amo-Chr13 126974741 126980896 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo13g3762 zf-CCCH 1.5e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3762 - K22909 gmx:100783856 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3762 13 126974741 126980896 Amo13g3762 13 126974741 126980896 ECH
Amo13g3762 13 126974741 126980896 Amo20g2536 20 119109844 119116468 ECH