Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3751 ATGAGGTATCTTGATCTGGATGATAGATCAAGGGAGGCAAGGTCACTAACGCGAACCAAGTGTCCAGCTCGGCTTAGGGTAAAGCTTGACTACGGCTACGGTAGATGGAAGGTATCATGTTTTGTGGAATCTCACAACCACGATCTGACGCCACCCCAATTTGCACATCTGGTTCCGGCCAATCGTCGTCTCACTGTCACTGATAAAGTCCAAAACACCCTCATTGACTTCATGCATAACCTGGATAGGGCCTTAAAGAAGTATAGAAACAACGAATTAATAGCTGACTTTAAGTCTCAGTGCTTAGAGCCAGTGATGATTACCTCGTTGGAGGTATATGAAAGATCTGCATCATGTTATTTCACGCGAAATATTTTCAAGGAAATTTGTAATGAGATTCAAAGGGCAGGGGCTTTGAATATCAAGGTACTAAGCACAACCTTAGACAAGGTAGAGTTCAGTGTGACTGCTCTCGGAGACCTGGCCAAAGATCGACGGGTGGAAGTCGATAGAGGTAAGAATCTGTTCTTGTGCTCGTGCAAGCTGTTTGAATCACGTGGTATTCCCTATAGTCATGTCTTATGTGCCATGAAGTTCGAAAACATACTTGAGTTTCCAGATTCGTTGATCTACAAAAGGTGGACAAAGAATGCAAAGAACGAATTTATTAGCACAGAAATGCCTGTGAACGATGACGTCGAAAGGTCACGCAAACAAGGCAAGTCAACTCCTAATGTTAACGTGGAAGGCATCAATGATCCCTTTGTTGTCAAAAGCAAAGGAGCCCCTTCCAAGAGGTCTTCTTGGAGGAAGAAGAGAGCATGCTCTAATTGCCACAAGTACAATCATTACTACAAGCGCTGTCCAGATCTGATGCAGCATAGTGTGGAAGGTAACCCTCGCGATCGATCAGACGGCAATGCATTAGCCAAGAACTCAGGTTTTAGTCCAGAAAGGTTTGCTAATTCTTCGAGGTCGTTCTCAGTTAAGTTCGAACACCATTCAGAACCTAAGACCAAGCCTTTTAAAAAGGGTGGAACAAGGAAGTTTACGGCGACAGGTATGAGGAACCGGAAGGGTAAAGACAACACTTTTGATGAGCGGAGCCTCCATGAAAGCAATGAATCCATTGACATCGCGTCCATGAATGGATTTTTCAACAGAAATCTCTACTCGTTAACACAGGTGAAGGAGTCACAGCAGGACAAGGGACATTCATTCATAAACTATGAATGCGTTAATGATGTCATGGATGAAAAATGTGACACACCACATGTGCATATTGATGTCCGAGATCTGTTACCATCCTCAATGCCTTGTGGCAACAAACAAGGATCGTACATGGCATTGTTCGTGTCGATGCATAGGACACTTTGA 1377 0.4386 MRYLDLDDRSREARSLTRTKCPARLRVKLDYGYGRWKVSCFVESHNHDLTPPQFAHLVPANRRLTVTDKVQNTLIDFMHNLDRALKKYRNNELIADFKSQCLEPVMITSLEVYERSASCYFTRNIFKEICNEIQRAGALNIKVLSTTLDKVEFSVTALGDLAKDRRVEVDRGKNLFLCSCKLFESRGIPYSHVLCAMKFENILEFPDSLIYKRWTKNAKNEFISTEMPVNDDVERSRKQGKSTPNVNVEGINDPFVVKSKGAPSKRSSWRKKRACSNCHKYNHYYKRCPDLMQHSVEGNPRDRSDGNALAKNSGFSPERFANSSRSFSVKFEHHSEPKTKPFKKGGTRKFTATGMRNRKGKDNTFDERSLHESNESIDIASMNGFFNRNLYSLTQVKESQQDKGHSFINYECVNDVMDEKCDTPHVHIDVRDLLPSSMPCGNKQGSYMALFVSMHRTL* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3751 458 SMART 26again6 176 203 IPR006564 GO:0008270
Amo13g3751 458 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 11 57 IPR031052 GO:0006355
Amo13g3751 458 SUPERFAMILY Retrovirus zinc finger-like domains 261 293 IPR036875 GO:0003676|GO:0008270
Amo13g3751 458 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 71 228 IPR031052 GO:0006355
Amo13g3751 458 MobiDBLite consensus disorder prediction 329 343 - -
Amo13g3751 458 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 11 57 - -
Amo13g3751 458 MobiDBLite consensus disorder prediction 296 365 - -
Amo13g3751 458 MobiDBLite consensus disorder prediction 230 268 - -
Amo13g3751 458 Pfam FAR1 DNA-binding domain 8 50 IPR004330 -
Amo13g3751 458 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 71 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3751 Amo-Chr13 126681842 126684497 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo13g3751 FAR1 7.5e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3751 - - ahf:112803750 716.457