Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3750 ATGAAAATTTTTTATTTTTTGTTTAGTTTTGTTAAAATTTGTAATTGTAAGTCACATCTGAAAAGTGGGGATTTGGAGTGGTACTTCTTCTGTGCAAGAGGAAAAAAATATGGAATTGGGTCGAAGACGAACCGTGCTATAAAGAATGGGTACTGGAAAGCTACTGGTATGGACAAAGCTATTGTTCAGCATGATAAGCAAACTGTGGGGATGATGAAAATCCTTGTTTTCCACACTGGTAAAGCGCCTCATGGGACCCCAACCGATTGGGTTATGCATGAGTATAGGCTTCAAGATAAAGACCTTACTGACAAAGGAATTGCTCAGGACTCCTATGTTATCTGTAAGGTGTTCCGAAAGGAGGGTCATGGCCCACGGACACGGAGCGGTGCACAATATAGGAAACCATTTAATGAAGAAGATTGGGATGATGATGATCATCACGTTGTTGAGGAGGGGGGAACCCCTTCAACTGCTTTGGTTGCGCCGGTTTCCATTCAGTCTACGACATTCGATGGCTCTTCTTACATGAAGCCAACTTCTGTTTCATGTGAGTCGGGACCTGTGGCTACTTCTCCTGTCCCATCAACTCCTTCTTCAGATGCAAGCATTCACACGGTTAATAATGTTAATAATTCAACAGTGACTGATCTATCCAAAGACGAAAAAACAGTACCTGAGGAAAATATTGCTGCCGGTGACCTCTTGAGTAAGTTTTTTGAGGGTTTGGAAGACCTTGAGTCTGAATACACTCCAAATGGAGTGGGCTTGGATGACTTTTCCCCACATGGAATAAACTATGATGACTTGAGGCACTTGGACTTGATTGATCTCAATTTCCTATAG 846 0.422 MKIFYFLFSFVKICNCKSHLKSGDLEWYFFCARGKKYGIGSKTNRAIKNGYWKATGMDKAIVQHDKQTVGMMKILVFHTGKAPHGTPTDWVMHEYRLQDKDLTDKGIAQDSYVICKVFRKEGHGPRTRSGAQYRKPFNEEDWDDDDHHVVEEGGTPSTALVAPVSIQSTTFDGSSYMKPTSVSCESGPVATSPVPSTPSSDASIHTVNNVNNSTVTDLSKDEKTVPEENIAAGDLLSKFFEGLEDLESEYTPNGVGLDDFSPHGINYDDLRHLDLIDLNFL* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3750 281 SUPERFAMILY NAC domain 21 120 IPR036093 GO:0003677|GO:0006355
Amo13g3750 281 ProSiteProfiles NAC domain profile. 1 120 IPR003441 GO:0003677|GO:0006355
Amo13g3750 281 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 20 189 - -
Amo13g3750 281 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 198 265 - -
Amo13g3750 281 Gene3D NAC domain 11 123 IPR036093 GO:0003677|GO:0006355
Amo13g3750 281 MobiDBLite consensus disorder prediction 187 206 - -
Amo13g3750 281 Pfam No apical meristem (NAM) protein 21 97 IPR003441 GO:0003677|GO:0006355
Amo13g3750 281 PANTHER PLANT NAC DOMAIN PROTEIN 20 189 - -
Amo13g3750 281 PANTHER PLANT NAC DOMAIN PROTEIN 198 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3750 Amo-Chr13 126640313 126642673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3750 18 223 NAC Transcription Factor Family AT5G09330 39.035 3.33e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo13g3750 NAM 4.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3750 - - adu:107480257 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3750 13 126640313 126642673 Amo13g3750 13 126640313 126642673 ECH
Amo13g3750 13 126640313 126642673 Amo03g2847 03 119392253 119394880 hybridization
Amo13g3750 13 126640313 126642673 Amo10g2083 10 74662546 74664564 PCT
Amo13g3750 13 126640313 126642673 Amo20g2573 20 120515985 120519140 PCT
Amo10g2083 10 74662546 74664564 Amo13g3750 13 126640313 126642673 PCT
Amo20g2573 20 120515985 120519140 Amo13g3750 13 126640313 126642673 PCT