Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3721 ATGAGTGAACCTGAAATGACCATTCCACACGTATTCAGATGCCCTATCAGTTTGGACTTGTTTGAAGATCCAGTGACTCTATGCACTGGTCAAACCTATGACAGATCAAGCATAGAGAAATGGTTAGGTACAGGTAACCTGATATGCCCTGTCACAATGCAGAAGCTCCATGACCCTTCCATTGTTCCCAACCACACTCTCCGCCACTTGATCCACCAGTGGCTTCAACTTGGTCCTCCATTTCACCCTGGTAACTCTGCAACTATTGATTCTCTAGCTGCTTTGAAACACACCCTTCAATCTCAAGAGGATGATACCTTAGAGAACAAGCTCCAAGTACTTGAGAAAATCAATGTCTTCTTTTCTGGTAATGAGATTACTCAAATTAGAGGACAAAACAAGAAACTTCTGACTTCAATAGCAATGGGAATAGCAGTAAAACTACTGGAGCTAGAGAGTGGTAGAGAGACATTGGTGAGTCACCCAAACGGGGTTGATACTTTGGTGAAGTTGGTGTTCAGTGTAAAATGTGATCAAGATTGCAGTGATAGTGCTGTTGAGGCACTTTCCATTGTTTGTGGTGATTATATAAGTGCAAGAGAACAAGCCATTGGTGCTGGGGTTATGACAAAGTTGCTGTTGCTTATGCAGAGTCATTGTGCCACCACTACTAAATCAAAGACCAGAATGCTCCTCAAATTGCTCAAATCCAAGTGGGTTCAGGTGCCAAAGTAG 735 0.4286 MSEPEMTIPHVFRCPISLDLFEDPVTLCTGQTYDRSSIEKWLGTGNLICPVTMQKLHDPSIVPNHTLRHLIHQWLQLGPPFHPGNSATIDSLAALKHTLQSQEDDTLENKLQVLEKINVFFSGNEITQIRGQNKKLLTSIAMGIAVKLLELESGRETLVSHPNGVDTLVKLVFSVKCDQDCSDSAVEALSIVCGDYISAREQAIGAGVMTKLLLLMQSHCATTTKSKTRMLLKLLKSKWVQVPK* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3721 244 PANTHER WDSAM1 PROTEIN 131 238 IPR045185 GO:0061630
Amo13g3721 244 PANTHER WDSAM1 PROTEIN 6 124 IPR045185 GO:0061630
Amo13g3721 244 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Amo13g3721 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 78 IPR013083 -
Amo13g3721 244 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Amo13g3721 244 PANTHER OS02G0542800 PROTEIN 131 238 - -
Amo13g3721 244 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Amo13g3721 244 PANTHER OS02G0542800 PROTEIN 6 124 - -
Amo13g3721 244 CDD RING-Ubox_PUB 12 54 IPR045210 -
Amo13g3721 244 SUPERFAMILY ARM repeat 106 235 IPR016024 -
Amo13g3721 244 SUPERFAMILY RING/U-box 3 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3721 Amo-Chr13 125793919 125795175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3721 8 74 U-box Gene Family AT1G49780 62.687 7.12e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3721 - - adu:107479288 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3721 13 125793919 125795175 Amo13g3721 13 125793919 125795175 ECH
Amo13g3721 13 125793919 125795175 Amo03g2772 03 117545081 117546579 hybridization